New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5739035 = | 16 (0.590) | 6 (0.240) | 6/270 | 2.1 | 29.5% | intergenic (‑56/+101) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
? | NC_002947 | 5739114 = | 14 (0.560) | intergenic (‑135/+22) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
TTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCA > NC_002947/5739000‑5739263 | ttGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCa < 2:401139/150‑1 (MQ=255) tCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACCCCCGCGCCCCACCGGGATGGTGTTTTGAAACTACGTCGGTGGGGGCGGGCGCGCCCGCGAATGGCCGCCCCGCGGGCCCAGGGGGGGGAACGGCGTGGCAGTacac > 1:422191/1‑150 (MQ=255) gTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATTGTGTTTTTGACCTAGTTGTTTGGGTGCGGGCGCGCCCGCGAAGGGGCGCCCAGCGGGCCCAGGGGCGTTAAATGCTTTGCAGTAAAccc > 2:203007/1‑150 (MQ=37) aGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTa < 2:541159/150‑1 (MQ=255) GGGCACGCCCGCTCCCACCGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCaa > 2:405981‑M1/1‑150 (MQ=255) ccgctcccacagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCg > 1:409780‑M2/64‑122 (MQ=255) ccgctcccacagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCg < 2:409780‑M2/59‑1 (MQ=255) acGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCCGACTACCCTTGGCCAACAGGTCCa > 2:280/2‑150 (MQ=255) cccacagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaaggggCTGCGCAGCAGCCCCCGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGc > 1:136057‑M2/60‑150 (MQ=255) acagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACa > 2:95647‑M2/56‑136 (MQ=255) acagaagtaggtgcaaaacaccatcccctgtgggagcgggcgtgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACa < 1:95647‑M2/81‑1 (MQ=255) acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCttt > 2:559641/1‑150 (MQ=255) cggggATGGTGTTTTGCACATACTTCTGTGGGTGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTc < 1:258313/149‑1 (MQ=255) gggATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGa > 2:195864/1‑150 (MQ=255) aagtaggtgcaaaacaccatcccctgtgggagcgggcgcgcccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGa > 1:605554‑M2/52‑150 (MQ=255) ttttGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGgcg > 1:549225/1‑150 (MQ=255) ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggt > 1:252164/1‑150 (MQ=255) ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggt > 1:252154/1‑150 (MQ=255) gtgGGCGGGGCCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggtcacg < 1:203007/150‑1 (MQ=255) gAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCg > 1:361514/1‑150 (MQ=255) gCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTa < 1:549296/150‑1 (MQ=255) ccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACATGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTCCCCTTGGCCAACAGGTCCACGGCCTTGTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCAcc > 1:287868‑M2/11‑150 (MQ=255) ccgcgaagggCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCAcc > 1:287858‑M2/11‑150 (MQ=255) ccgccCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCa > 1:274275/1‑150 (MQ=255) | TTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCA > NC_002947/5739000‑5739263 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |