| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,167,912 | +A | coding (725/1344 nt) | oprB‑I → | carbohydrate‑selective porin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,167,910 | 1 | . | A | 85.7% | 15.4 / ‑2.0 | 7 | coding (723/1344 nt) | oprB‑I | carbohydrate‑selective porin |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (3/3); total (3/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGTGGGCGCTGCGGGTGAAGTACAACATCACGCCGGAGTTCTTCGTACAGGTCGGGGCCTTCGAGCAGAACCCTTCCAACCTGGAAACCGGCAACGGCTTCAAGCTCAGCGGCAGTGGTACC‑AAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGTACCGCCTGGGT > NC_002947/1167787‑1167985 | ccAGTGGGCGCTGCGGGTGAAGTACAACATCACGCCGGAGTTCTTCGTACAGGTCGGGGCCTTCGAGCAGAACCCTTCCAACCTGGAAACCGGCAACGGCTTCAAGCTCAGCGGCAGTGGTACC‑AAGGGGGCGATc < 1:339699/136‑1 (MQ=255) cGGGTGAAGTACAACATCACGCCGGAGTTCTTCGTACAGGTCGGGGCCTTCGAGCAGAACCCTTCCAACCTGGAAACCGGCAACGGCTTCAAGCTCAGCGGCAGTGGTACCAAAGGGGGCGATCTTGCCGGTGGaa > 2:324961/1‑136 (MQ=255) tCGGGGCCTTCGAGCAGAACCCTTCCAACCTGGAAACCGGCAACGGCTTCAAGCTCAGCGGCAGTGGTACCAAAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGt > 1:228475/1‑136 (MQ=255) ttCGAGCAGAACCCTTCCAACCTGGAAACCGGCAACGGCTTCAAGCTCAGCGGCAGTGGTACCAAAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGTACCGCCTg < 2:90124/136‑1 (MQ=255) gAGCAGAACCCTTCCAACCTGGAAGCCGGCAGCGGCTTCAAGCTCAGCGGCAGTGGTACCAAAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGTACCGCCTGGGt < 1:470146/136‑1 (MQ=255) aaCGGCTTCAAGCTCAGCGGCAGTGGTACCAAAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGTACCGCCTggg > 1:221810/1‑105 (MQ=255) aaCGGCTTCAAGCTCAGCGGCAGTGGTACCAAAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGTACCGCCTggg < 2:221810/105‑1 (MQ=255) | CCAGTGGGCGCTGCGGGTGAAGTACAACATCACGCCGGAGTTCTTCGTACAGGTCGGGGCCTTCGAGCAGAACCCTTCCAACCTGGAAACCGGCAACGGCTTCAAGCTCAGCGGCAGTGGTACC‑AAGGGGGCGATCTTGCCGGTGGAAGCGGTGTGGTCGCCCAAGGTCAATGGCCTGCCGGGCGAGTACCGCCTGGGT > NC_002947/1167787‑1167985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |