New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	198881 =	13 (0.580)	3 (0.150) +AGCGTCGTTGTAAAC	3/234	1.3	32.6%	coding (4387/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 211440	1 (0.040)					coding (16946/26049 nt)	PP_0168	putative surface adhesion protein

ACCTCGTCGAGGGTGTCGGTGACATCCACTTTCGCGGCACCGCCCAACTCGAGGTTCTCGAACGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/198993‑198881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTACGGCGCGCTGGTCTCGCCAG  <  NC_002947/211440‑211416                                                                                                                  |||||||||||||||                          ACCTCGTCGAGGGTGTCGGTGACATCCACTTTCGCGGCACCGCCCAACTCGAGGTTCTCGAACGCAGCACCAGTGGCGTCCACCGCCGAGGTGATGCCCAGGCTGATCTGGCCAGCGTCGTTGTAAACGTGcgact                   >  2:299500/1‑131                                                           CGAACGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCGTCGTTGTAAACGTGTACGGCGCGCTGGTCTCGCCAG  >  1:499217/1‑95                                                           CGAACGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCCAGCGTCGTTGTAAACGTGTACGGCGCGCTGGTCTCGCCAG  <  2:499217/95‑1                                                                                                                  |||||||||||||||                          ACCTCGTCGAGGGTGTCGGTGACATCCACTTTCGCGGCACCGCCCAACTCGAGGTTCTCGAACGCAGCACCAGTGGCGTCCACCGCCGAGTTGATGCCCAGGCTGATCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/198993‑198881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTACGGCGCGCTGGTCTCGCCAG  <  NC_002947/211440‑211416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.