| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1015848 = | 2 (0.090) | 6 (0.270) | 6/262 | 0.9 | 54.6% | intergenic (‑75/‑693) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | 5066251 = | 8 (0.360) | intergenic (‑421/‑70) | PP_4458/PP_4459 | opine ABC transporter substrate‑binding protein/transposase | |||||
GTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCG > NC_002947/1015713‑1015977 | gaccgaactcgtcggttcagctcaacttgttcatcgtcactgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaaca < 1:184799‑M1/1‑1 (MQ=255)gaccgaactcgtcggttcagctcaacttgttcatcgtcactgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaaca < 1:501132‑M1/1‑1 (MQ=255)gaccgaactcgtcggttcagctcaacttgttcatcgtcactgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaaca < 1:433172‑M1/1‑1 (MQ=255) cacacaGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGt < 2:31050‑M1/136‑2 (MQ=255) tcagctcaacttgttcatcgtcactgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTa > 2:433172‑M1/120‑136 (MQ=255) cTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagata > 1:139965‑M1/1‑122 (MQ=255) tGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgtt > 2:293811‑M1/1‑115 (MQ=255) accaccGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattc < 2:37150‑M1/136‑32 (MQ=255) gatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGAt < 1:156128‑M1/48‑1 (MQ=255) ccAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccat < 2:139965‑M1/136‑43 (MQ=255) gtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTaa < 1:190045‑M1/51‑1 (MQ=255) aGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattg < 2:218974‑M1/136‑45 (MQ=255) aGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattg < 2:221688‑M1/136‑45 (MQ=255) gagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGAt > 1:468575‑M1/81‑136 (MQ=255) cATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaac < 1:474279‑M1/102‑19 (MQ=255) cATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaac > 2:474279‑M1/1‑84 (MQ=255) atcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAAc > 2:501132‑M1/73‑136 (MQ=255) tCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctgga > 2:544902‑M1/1‑74 (MQ=255) gTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACAAGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTATATGAATGATTg > 1:166090/1‑136 (MQ=255) aagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCt < 2:209510‑M1/96‑1 (MQ=255) tAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGa > 1:6609/1‑136 (MQ=255) aTAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaac < 1:511922‑M1/59‑19 (MQ=255) aTAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaac > 2:511922‑M1/1‑41 (MQ=255) gATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcacctttcgcgctccagacgtac < 2:151512‑M1/136‑104 (MQ=255) aaaGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcacctttcgcgctccagacgtaccgagagg > 1:403128‑M1/1‑26 (MQ=255) taatAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcacctttcgcgctccagacgtaccgagagggttgggcgttgtg < 2:330129‑M1/135‑124 (MQ=255) | GTAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCG > NC_002947/1015713‑1015977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |