| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1015854 | 2 (0.090) | 15 (0.690) | 13/254 | 0.3 | 69.9% | intergenic (‑81/‑687) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 5067412 | 11 (0.510) | coding (1092/1098 nt) | PP_4459 | transposase | |||||
TTTTTAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCTTTGCTAGCAGCGCGAAAGCTTT > NC_002947/5067278‑5067547 | tttttAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAc > 2:18987‑M2/1‑135 (MQ=255) cacaACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttatta < 2:330129‑M2/136‑14 (MQ=255) ccTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttt > 1:403128‑M2/1‑110 (MQ=255) cGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGtcgtcg > 1:165862/1‑136 (MQ=255) cGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGtcgtcg > 1:289420/1‑136 (MQ=255) gTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatc < 2:151512‑M2/136‑34 (MQ=255) ggTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGc > 2:503141/1‑136 (MQ=255) gcgcAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACt > 2:521585/1‑136 (MQ=255) cgcAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTa > 1:304594/1‑136 (MQ=255) tCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatgga > 2:544902‑M2/1‑62 (MQ=255) cAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttct < 2:218974‑M2/136‑93 (MQ=255) cAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttct < 2:221688‑M2/136‑93 (MQ=255) aTGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctgg < 2:139965‑M2/136‑95 (MQ=255) gCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAAt > 2:391566/1‑136 (MQ=255) gCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAAt > 2:400242/1‑136 (MQ=255) gaATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggtggt < 2:37150‑M2/136‑106 (MQ=255) gaATAAAGAGAACGTTTTATCTGAGACAGGACACTAGTCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGTCCCTACCCAGACACTATGAGCAATGACTCGTAGGAATAGCATGAATAACtaacc > 2:540456/1‑132 (MQ=255) gaACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCtt > 1:477287/1‑136 (MQ=255) gaACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTAAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCtt > 1:150433/1‑136 (MQ=255) aaCGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggtggtagcggttaca > 2:293811‑M2/1‑21 (MQ=255) gTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatg > 2:474279‑M2/1‑18 (MQ=255) gTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatg < 1:474279‑M2/102‑85 (MQ=255) gTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttat < 1:511922‑M2/59‑42 (MQ=255) gTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttat > 2:511922‑M2/1‑18 (MQ=255) tATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggtggtagcggttacattggaag > 1:139965‑M2/1‑14 (MQ=255) cAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCTTTGCTAGCAGCGCGAAAg > 1:351165/1‑136 (MQ=255) acactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggtggtagcggttacattggaagtcatacctgtgtg < 2:31050‑M2/136‑136 (MQ=255) | TTTTTAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCTTTGCTAGCAGCGCGAAAGCTTT > NC_002947/5067278‑5067547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |