| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 4,018,201 | G→A | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,018,201 | 0 | G | A | 94.1% | 52.9 / ‑4.7 | 17 | intergenic (+144/‑36) | mvaB/PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/11); minor base T (0/1); total (5/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGGTTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACA > NC_002947/4018080‑4018308 | gtgGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTgg > 1:492975/1‑136 (MQ=255) tgtgTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACATATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgc < 2:483221/133‑1 (MQ=255) ggTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcac < 1:467089/136‑1 (MQ=255) ggTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcac < 1:587168/136‑1 (MQ=255) ggTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcac < 1:526660/136‑1 (MQ=255) gTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcacg < 1:221907/136‑1 (MQ=255) gAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcacgca < 1:32674/136‑1 (MQ=255) gtTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAAACGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTATCAAAAGTTGgcacgaacaatg > 1:30385/1‑132 (MQ=255) aCCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCta < 2:384055/136‑1 (MQ=255) ccTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCtat < 2:421925/136‑1 (MQ=255) aTCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACaaaaaaaa > 2:418768/1‑136 (MQ=255) cAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAgg < 1:489624/136‑1 (MQ=255) ggtgTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAAc > 1:299698/1‑136 (MQ=255) tgtCTACAAAAAATCTTAAATATTTAATTTTAATGTTTTTTCAAAAGTTGGAACGAACCTTGTTATATCTATGTAAAAACAACAAAAAAACCGCGATACCAAATAAAAACAACAGGTAACGGCTCTGACATAACaa < 1:22503/136‑1 (MQ=255) cGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGaa < 1:409690/136‑1 (MQ=255) cGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGaa < 1:152045/136‑1 (MQ=255) aaaaaTCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGATAACGGCTCTGACATAACAAGAacaaca > 1:455401/1‑136 (MQ=255) | GTGGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGGTTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACA > NC_002947/4018080‑4018308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |