| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652786 | 29 (1.300) | 35 (2.140) | 7/194 | 0.5 | 76.7% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | 4813203 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
GCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAA > NC_002947/4813131‑4813336 | gaataattggcccgaaacaaacgtaggagtgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 2:416786‑M2/4‑1 (MQ=255)gaataattggcccgaaacaaacgtaggagtgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 1:416786‑M2/73‑76 (MQ=255)gaataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc > 2:129799‑M2/73‑136 (MQ=255) aataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 2:20481‑M2/4‑1 (MQ=255) aataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 1:20481‑M2/72‑75 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:205430‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:499050‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:205430‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:307573‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 2:389094‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:369825‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:369825‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg < 1:499050‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 1:389094‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAgg > 2:307573‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaca > 2:122842‑M2/71‑72 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaca < 1:122842‑M2/2‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:341452‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:286770‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:498583‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:119971‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:63185‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:119971‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:63185‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:286770‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:341452‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:498583‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:217405‑M2/71‑136 (MQ=255) tggccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCCACGCCGTCCACTCAAAATTTAAACGCCGcccc > 1:95903‑M2/65‑136 (MQ=255) tggccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGcccc > 2:37490‑M2/65‑136 (MQ=255) ggccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgctctcaCACGCGCTGAAAATCCTCCGGCCAACCCCACAAAATTACAACGCCGTCCACGCAAAAATCCCACGcccccccc > 1:354452‑M2/64‑136 (MQ=255) ggccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:133133‑M2/64‑129 (MQ=255) ggccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc < 2:133133‑M2/66‑1 (MQ=255) ggccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgccggcggcgctcgatctcaCAGGCGCAGAAAATCCACCGGCAAACCCCTCAAAATTCCAAACCCGTCCACACAAAATTACAACGCCGccccc > 1:68013‑M2/64‑136 (MQ=255) ttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCt > 2:519529‑M2/39‑136 (MQ=255) agcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCca > 1:243633‑M2/29‑136 (MQ=255) cggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGAccc < 2:217405‑M2/121‑1 (MQ=255) ggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCt < 1:519529‑M2/122‑1 (MQ=255) caCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGaa < 1:37490‑M2/134‑1 (MQ=255) | GCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAA > NC_002947/4813131‑4813336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |