New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1015848 =	0 (0.000)	5 (0.230)	4/262	1.1	45.5%	intergenic (‑75/‑693)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	5066251 =	12 (0.540)					intergenic (‑421/‑70)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase

ATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCT  >  NC_002947/5066116‑5066386                                                                                                                                        |                                                                                                                                        aTCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAgtg                                                                                                                                         >  2:27287/1‑136 (MQ=255)                gCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAAt                                                                                                                          >  1:30934/1‑136 (MQ=255)                gCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAAt                                                                                                                          <  2:362948/136‑1 (MQ=255)                      gaaaccgcgtcttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTAt                                                                                                                    >  1:256620‑M2/115‑136 (MQ=255)                                 ttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGc                                                                                                         >  1:494310‑M2/104‑136 (MQ=255)                                        gTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCtt                                                                                                  <  2:487356/136‑1 (MQ=255)                                                         gTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGAc                                                                                 >  1:279644/1‑136 (MQ=255)                                                                     gagaCGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGc                                                                     <  1:521647/136‑1 (MQ=255)                                                                       gaCGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGa                                                                   <  2:53153/136‑1 (MQ=255)                                                                        gttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                  >  1:229042‑M2/65‑136 (MQ=255)                                                                        gttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTGGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                  >  1:94445‑M2/65‑136 (MQ=255)                                                                                gtgtCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATtctc                                                          <  2:30934/136‑1 (MQ=255)                                                                                              tAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTc                                            >  2:487997/1‑136 (MQ=255)                                                                                                 aaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGt                                         <  1:536522‑M2/97‑1 (MQ=255)                                                                                                               ttGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGCGACGATGAACAAGt                           >  1:37706/1‑136 (MQ=255)                                                                                                                           tGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcg               >  1:420710/1‑136 (MQ=255)                                                                                                                           tGACTCTGCTAGTGTTCTCTCTCAAAAATAAGAATTCAATTTGAGCTACGCTTCCTAGGTCTAACACGACGCGGTGTGTAGCGATGAATTCTCAATACATCGTGCTCAGTGACGATGAACAAGATGAGCTGAACcg               >  1:330561/1‑136 (MQ=255)                                                                                                                                       tGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTc   <  2:494310‑M2/135‑1 (MQ=255)                                                                                                                                        gtTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCt  <  1:27287/136‑1 (MQ=255)                                                                                                                                        |                                                                                                                                        ATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCT  >  NC_002947/5066116‑5066386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.