New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4857447	0 (0.000)	14 (0.910)	6/182	0.6	90.3%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4857506	3 (0.200)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator

AAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGA  >  NC_002947/4857453‑4857636                                                      |                                                                                                                                   aaGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgtt                                                  >  1:61413/1‑136 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgccacaaggccgcgcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgcggggt                                            <  1:583861‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt                                            <  1:78886‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt                                            <  1:292577‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt                                            <  1:321352‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt                                            <  1:398336‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt                                            <  1:460473‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCGTCGCGCccctttcgcgacacaaggccgcgcccacaaaaaagcagcccttgcaggcgttgggcgcggggatttgacgccaccgcccccgcggggg                                            <  1:533392‑M2/136‑89 (MQ=255)       ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCATCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgaattgacaccaccgcccccgctgggt                                            <  1:268971‑M2/136‑89 (MQ=255)        cccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgccccgctgggtat                                           <  1:405158‑M2/136‑90 (MQ=255)        cccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAgcg                                           >  2:419286/1‑136 (MQ=255)                    tgctgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGt                               >  1:126089/1‑136 (MQ=255)                    tgctgcGAAGCTGAAATCCCGGGGCCGCTTCGCAGccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctct                               <  1:209897‑M2/136‑102 (MQ=255)                          gAAGCTGAAATCCCGGGGCCGCTTCGCAGccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattga                         <  1:544146‑M2/136‑108 (MQ=255)                          gAAGCTGAAATCCCGGGGCCGCTTCGCAGccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattga                         <  1:111243‑M2/136‑108 (MQ=255)                                                ttCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattgaattgtcaggcctttcccatgag   <  1:181193‑M2/136‑130 (MQ=255)                                                 tCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgccccgctgggtataaaccgcctcttattgaattgtcaggcctttcccatgagct  >  2:405158‑M2/1‑6 (MQ=255)                                                      |                                                                                                                                   AAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGA  >  NC_002947/4857453‑4857636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.