Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	1,515,811	(33-bp)2→1	pseudogene (715‑747/1851 nt)	PP_1325 ←	putative lipoprotein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	1515769	1515801	33	29 [0]	[0] 29	PP_1325	putative lipoprotein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1515802 =	0 (0.000)	22 (1.450)	14/180	0.1	100%	pseudogene (756/1851 nt)	PP_1325	putative lipoprotein
	?	NC_002947	= 1515768	0 (0.000)					pseudogene (790/1851 nt)	PP_1325	putative lipoprotein

CTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAGGGTG  >  NC_002947/1515674‑1515928                                                                                                                                 |                                                                                                                               tcgaacacctgtaccgcaggcgctggctggccgctttgctgggcctggatgtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCa                                                                                                                         >  2:265861‑M1/129‑136 (MQ=255) tcgaacacctgtaccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCa                                                                                                                         >  2:126065‑M1/129‑136 (MQ=255)    aacacctgtaccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCg                                                                                                                      <  1:159314‑M1/11‑1 (MQ=255)            taccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGgctggctg                                                                                                              >  2:563674‑M1/118‑136 (MQ=255)              ccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCtggctggc                                                                                                            >  1:206884‑M1/116‑136 (MQ=255)              ccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCtggctggc                                                                                                            <  1:64669‑M1/21‑1 (MQ=255)                      gctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCt                                                                                                    <  2:465569‑M1/29‑1 (MQ=255)                                                         ggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGggcg                                                                 <  1:332597‑M1/64‑1 (MQ=255)                                                         ggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGggcg                                                                 <  2:127424‑M1/64‑1 (MQ=255)                                                            catgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCa                                                              >  2:64669‑M1/70‑136 (MQ=255)                                                                        gcgcagggcgcgggctacaccggccagcgggccttcctgaggccgccgcagggcgatCGTGGTCAGCGGCTGGCTGGCCAGCTCCGTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCggg                                                  <  1:491633‑M1/79‑1 (MQ=255)                                                                        gcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCggg                                                  <  1:38978‑M1/79‑1 (MQ=255)                                                                         cgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGt                                                 <  1:423212‑M1/80‑1 (MQ=255)                                                                                 gcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTg                                         >  1:555092‑M1/49‑136 (MQ=255)                                                                                 gcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTg                                         >  2:286043‑M1/49‑136 (MQ=255)                                                                                    ggctacacctgccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGAcc                                      >  1:31586‑M1/46‑136 (MQ=255)                                                                                    ggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGAcc                                      >  1:102305‑M1/46‑136 (MQ=255)                                                                                           ccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCtt                               <  2:526431‑M1/98‑1 (MQ=255)                                                                                           ccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCtt                               <  1:529914‑M1/98‑1 (MQ=255)                                                                                              gccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGa                            >  1:373841‑M1/36‑136 (MQ=255)                                                                                              gccagcgggccttcctgaggcagcagcagggcgagCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGGGGGCCGGGTGCTGTTTGACCCAGGCTTCGa                            >  1:456960‑M1/36‑136 (MQ=255)                                                                                                  gcgggccttcctgaggcagcagcagggcgatCGTGGTCCGCGCCTGGCTGGCCAGCTCATTGAGCTTGGTCAGGGCCAGCGGCAGGTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACACAGGCTTCGatgcc                        <  1:40830‑M1/105‑3 (MQ=255)                                                                                                        cttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtg                  >  2:442068‑M1/26‑136 (MQ=255)                                                                                                        cttcctgaggcagcagcagggcgagCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtg                  >  1:526431‑M1/26‑136 (MQ=255)                                                                                                            ctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtgctgc              <  1:516275‑M1/115‑1 (MQ=255)                                                                                                            ctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtgctgc              <  1:45477‑M1/115‑1 (MQ=255)                                                                                                              gaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtgctgctg            <  1:120958‑M1/117‑1 (MQ=255)                                                                                                                      agcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAggg    <  2:39629‑M1/125‑1 (MQ=255)                                                                                                                        cagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAGGGTg  <  2:269910‑M1/127‑1 (MQ=255)                                                                                                                                 |                                                                                                                               CTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAGGGTG  >  NC_002947/1515674‑1515928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑