Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4500951	4501014	64	3 [1]	[1] 2	PP_3987	site‑specific recombinase

CGAGAGATATCACTTCTATCGCACATTTATAATATGGCGCGGGAATGGGGCATTACCGACAGGGAAAACCCTGCTGCTGGCGTGCGCAAGAACAAAGAGCGACCCCGTGACTTCTATGCTGGACCGGAGATCTGGAACGCCGTTTACGATCGTGCTGCCAGCGAGCTACGCGA  >  NC_002947/4500978‑4501150                                      |                                                                                                                                        cGAGAGATATCACTTCTATCGCACATTTTTAATATGGCGCGGGAAGGGGGCATTACCGACAGGGAAAACCCTGCTGCTGGCGTGCGCAAGAACAAAGAGCGACCCCGTGACTTCTATGCTGGACCGGAGATCTGGa                                       <  1:271863/136‑1 (MQ=255)                                      cgcgGGAATGGGGCATTACCGACAGGGAAAACCCTGCTGCTGGCGTGCGCAAGAACAAAGAGCGACCCCGTGACTTCTATGCTGGACCGGAGATCTGGAACGCCGTTTACGATCGTGCTGCCAGCGAGCTACGCGa  >  1:131245/1‑136 (MQ=255)                                      |                                                                                                                                        CGAGAGATATCACTTCTATCGCACATTTATAATATGGCGCGGGAATGGGGCATTACCGACAGGGAAAACCCTGCTGCTGGCGTGCGCAAGAACAAAGAGCGACCCCGTGACTTCTATGCTGGACCGGAGATCTGGAACGCCGTTTACGATCGTGCTGCCAGCGAGCTACGCGA  >  NC_002947/4500978‑4501150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑