| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,148,023 | 0 | G | C | 26.1% | 32.2 / 14.3 | 24 | P68P (CCG→CCC) | arcD‑II | arginine/ornithine antiporter |
| Reads supporting (aligned to +/- strand): ref base G (10/7); new base C (2/4); total (12/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGGGATCTTCTCGCTGCCGCAGAACATGGCCGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCA > NC_002947/1147890‑1148153 | gcggGATCTTCTCGCTGCCGCAGAACATGGCCGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCCGa < 1:208183/136‑1 (MQ=255)gcggGATCTTCTCGCTGCCGCAGAACATGGCCGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCCGa < 2:389129/136‑1 (MQ=255) cTGCCGCAGAACATGGCCGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCggggg < 1:321970/136‑1 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCaa > 2:84328/1‑136 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCaa > 2:294562/1‑136 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCaa > 1:320797/1‑136 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCCGa > 1:150261/1‑106 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCCGa < 2:307246/106‑1 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCCGa > 1:307246/1‑106 (MQ=255) ccGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCCGa < 2:150261/106‑1 (MQ=255) ggCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCg < 2:254682/72‑1 (MQ=255) ggCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCg > 1:254682/1‑72 (MQ=255) tGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCgg > 2:83294/1‑136 (MQ=255) gcgGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACt > 2:196145/1‑136 (MQ=255) tCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGCGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCATTTCCTCGGCCTGGGGCTACTGGAt > 2:140830/1‑136 (MQ=255) cTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCgg < 2:30380/72‑1 (MQ=255) cTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCgg > 1:30380/1‑72 (MQ=255) cTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAAc > 2:16366/1‑136 (MQ=255) cTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAAc > 1:28661/1‑136 (MQ=255) cAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTTCATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGctgctg > 1:330700/1‑136 (MQ=255) aaGCCTGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTACTTCGTGCTGCTGTTCAGCa < 1:83294/136‑1 (MQ=255) aaGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTTCATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCa < 2:330700/136‑1 (MQ=255) aaGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCa < 1:84328/136‑1 (MQ=255) aaGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCa < 2:28661/136‑1 (MQ=255) aaGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCa < 2:320797/136‑1 (MQ=255) aaGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCa < 1:294562/136‑1 (MQ=255) | GCGGGATCTTCTCGCTGCCGCAGAACATGGCCGCGCGTGCTGATGTGGGCGCAGTGCTGATCGGCTGGGGGATCACCGCGGTCGGCATGTTGGCCCTGGCCTTCGTGTTCCAGACCCTGGCCAACCGCAAGCCGGAACTGGACTCGGGGGTATATGCCTACGCCAAGGCCGGCTTTGGCGAGTACATGGGCTTTTCCTCGGCCTGGGGCTACTGGATCAGCGCCTGGCTGGGCAACGTCGGCTATTTCGTGCTGCTGTTCAGCA > NC_002947/1147890‑1148153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |