| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4044380 | 280 (0.960) | 17 (0.060) | 12/268 | NT | 5.7% | coding (244/864 nt) | PP_3560 | LysR family transcriptional regulator |
| ? | NC_002947 | = 4044417 | 290 (1.010) | coding (281/864 nt) | PP_3560 | LysR family transcriptional regulator | |||||
GGTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4044229‑4044380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGGCCAGTTCGTCATAGGCAGCCAGAAGGCTTTCGGCGCGGGCCACCGCCAACTGGCCAGCTTCGGTCAGTACCACCTGCCTGCGGCTACGGTCGAACAAGGTCA < NC_002947/4044417‑4044270 GGTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGC > 2:2109445/1‑150GGTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGC > 1:2093485/1‑150 GTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCC > 2:439429/1‑150 GTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCC > 1:938537/1‑150 GTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCC > 1:4723600/1‑150 GTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCC < 1:4593789/150‑1 TCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCC > 1:1178959/1‑150 TCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCC < 1:180274/150‑1 ACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGCTGGCCAGGgcatcg < 2:1573449/150‑7 AACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGC‑C‑AGCGGCCGCGCAGGCTTGGGCCGCT < 2:6147094/150‑1 ACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGC‑C‑AGCGGCCGCGCAGGCTTGGGCCGCTG < 2:550910/150‑1 ACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGC‑C‑AGCGGCCGCGCAGGCTTGGGCCGCTG < 1:5968018/150‑1 TGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTG < 2:4787660/150‑1 TGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGC‑C‑AGCGGCCGCGCAGGCTTGGGCCGCTGGC < 2:1783773/150‑1 AAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGCCCGAAGCTGGCCAGTGGGCGGTGGCCCGCTCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTG‑‑GCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCA < 2:1110562/150‑1 AAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTG‑‑GCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCA < 1:3505098/150‑1 AAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTG‑‑GCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCA < 2:422592/150‑1 GTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAG < 2:4141714/150‑1 TGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGG < 1:3873266/150‑1 ACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGC < 1:1042262/150‑1 CTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCAT < 2:4796943/150‑1 TGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCG < 1:6546725/150‑1 GTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGG < 2:6417006/150‑1 TTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGACCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGGC < 1:560199/150‑1 CCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGC‑C‑AGCGGCCGCGCAGGCTTGGGCCGCTG > 2:2182977/1‑123 CCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCCTGGC‑C‑AGCGGCCGCGCAGGCTTGGGCCGCTG < 1:2182977/123‑1 CCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGGCCAGTTCGTCATAGGCAGCCAGAAGGCTTTCGGCGCGGGCCACCGCCAACTGGCCAGCTTCGGTCAGTACCACCTGCCTGCGGCTACGGTCGAACAAGGTC > 1:5883477/1‑150 CCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGGCCAGTTCGTCATAGGCAGCCAGAAGGCTTTCGGCGCGGGCCACCGCCAACTGGCCAGCTTCGGTCAGTACCACCTGCCTGCGGCTACGGTCGAACAAGGTCA > 2:6054672/1‑150 CCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGGCCAGTTCGTCATAGGCAGCCAGAAGGCTTTCGGCGCGGGCCACCGCCAACTGGCCAGCTTCGGTCAGTACCACCTGCCTGCGGCTACGGTCGAACAAGGTCA > 1:4028978/1‑150 GGTCAGCCTGCACATCAAAACCCTCGAAGACGAACTGAAGGTGACCTTGTTCGACCGTAGCCGCAGGCAGGTGGTACTGACCGAAGCTGGCCAGTTGGCGGTGGCCCGCGCCGAAAGCCTTCTGGCTGCCTATGACGAACTGGCCGATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4044229‑4044380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCCAGGGCATCGGCCAGTTCGTCATAGGCAGCCAGAAGGCTTTCGGCGCGGGCCACCGCCAACTGGCCAGCTTCGGTCAGTACCACCTGCCTGCGGCTACGGTCGAACAAGGTCA < NC_002947/4044417‑4044270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |