| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4976864 = | 276 (0.940) | 15 (0.050) | 8/260 | NT | 5.7% | intergenic (‑305/+112) | PP_4379/flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| ? | NC_002947 | 4976939 = | 230 (0.830) | intergenic (‑380/+37) | PP_4379/flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL | |||||
GTTTGCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4977018‑4976864‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgaTAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTA > NC_002947/4976939‑4977087 GTTTGCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGT < 2:40190/150‑1 TTGCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCG < 1:5510074/150‑1 TGCGCGCTTTTCTCAGCTTAGCCTGTTCGACCAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCTGCGCTATCGCGACCCAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGC < 1:3992083/150‑1 TGCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGC < 1:2061823/150‑1 TGCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAAGCTGCCTGCCTGATCCTGGGGCTGCTGCGCCGCCCTATCGCGACACAAGGCCCCCACCGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGC < 2:6297948/150‑1 GCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCG > 2:6744038/1‑150 CGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGA < 2:5394289/150‑1 TAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATGGGGCCGCatcgcg < 1:3407566/150‑7 TGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGATGCGGCCCCAGGATCAGGCAGGCAGATTAGATCTTGT > 2:2114618/1‑150 TGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGATGCGGCCCCAGGATCAGGCAGGCAGATTAGATCTTGT > 1:4708337/1‑150 TCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGATGCGGCCGCAGGATCAGGCAGGCAGATTAGATCTTGTCGA > 1:2433956/1‑150 TGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCT > 1:6434039/1‑150 TGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCT > 1:5132977/1‑150 GCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTG > 1:2775692/1‑150 CCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAAT > 1:6524701/1‑150 CTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGC > 2:1351837/1‑150 CTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGC > 2:2357037/1‑150 CTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGC > 1:53088/1‑150 TATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCG > 2:4354586/1‑150 TATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCG > 2:6042838/1‑150 TATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGGAGTCGTGGGAGCGGCCGTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCGGAGCTGAGAAATGCG > 2:6042729/1‑150 CCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGC > 1:5673323/1‑150 gGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCAT < 1:1280330/149‑1 TCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGT > 2:4959891/1‑150 TCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGT > 2:2606723/1‑150 TCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGT > 1:1484795/1‑150 TCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGT < 1:3841173/150‑1 TCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGT < 1:3625309/150‑1 TCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGT < 1:2753526/150‑1 CGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTC < 2:3451298/150‑1 GCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCA < 1:983866/150‑1 GCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCA < 1:6726826/150‑1 GCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCA < 1:4559280/150‑1 GCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCA < 2:5573603/150‑1 GCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCA > 1:3431301/1‑150 GCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCA < 2:749097/150‑1 GATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGT > 2:3466289/1‑150 GATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGT > 2:3514224/1‑150 GATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGT > 1:485334/1‑150 ATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTA < 1:406486/150‑1 GTTTGCGCGCATTTCTCAGCTAAGCCTGTTCGACAAGATCTAATCTGCCTGCCTGATCCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCCCCACAGGTCGTCCTCTCTCCTGGAGGTGGCGTATTCGTGGGAGCGGCCTTGCGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4977018‑4976864‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgaTAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTA > NC_002947/4976939‑4977087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |