| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5759743 | 283 (0.970) | 17 (0.060) | 10/266 | NT | 5.8% | coding (934/1086 nt) | glnL | two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
| ? | NC_002947 | = 5759779 | 280 (0.980) | coding (970/1086 nt) | glnL | two‑component system sensor histidine kinase/phosphatase GlnL/GlnG | |||||
AGCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5759591‑5759743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCGC < NC_002947/5759779‑5759631 AGCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCA < 2:4545747/150‑1AGCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCA < 2:4545917/150‑1AGCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCA < 2:4545962/150‑1 GCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCAT > 1:4196053/1‑150 CTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATG > 1:1014400/1‑150 CTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATG > 2:2499459/1‑150 CTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATG < 2:4122472/150‑1 CTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATG > 1:2721088/1‑150 CTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATG < 2:6088148/150‑1 TGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGA < 2:3500111/150‑1 CGCCAGTTCACCCTCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTG‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGA < 2:4634989/150‑1 CGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTG‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGA < 2:548494/150‑1 CCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCAGGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCAT < 2:1425439/150‑1 CAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCA‑‑G‑‑‑‑‑TGGCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATG < 2:1079035/150‑1 CAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATG < 2:4708729/150‑1 CAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATG < 1:2985441/150‑1 GGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCA‑‑GTGGCCGCCCAGCCCGGTACCGT‑CCGGGCGGCCAC > 1:1557962/1‑135 GGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCA‑‑GTGGCCGCCCAGCCCGGTACCGT‑CCGGGCGGCCAC < 2:1557962/135‑1 TGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCGTCTATCCCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCT < 1:4413145/150‑1 GAAACCCTCTTCTATCCCATGGTCAGTG‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCA > 2:954169/1‑150 GAAACCCTCTTCTATCCCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTG > 1:3188802/1‑57 GAAACCCTCTTCTATCCCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTG < 2:3188802/57‑1 TCTTCTATCCCATGGTCA‑‑G‑‑‑‑‑TGGCCGCCCGG‑ACGGTCCCGGGCTGCCACTGACCAAGGGATAGAAGAGGGTTTCCGGCCGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCCCGCTACCAGGCGGTGACGCACGTGGCCGA > 1:6344197/1‑150 TCTTCTATCCCATGGTCA‑‑G‑‑‑‑‑TGGCCGCCCGG‑ACGGTACCGGGCTGCCACTGCCCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGA > 1:6344203/1‑150 TCTTCTATCCCATGGTCA‑‑G‑‑‑‑‑TGGCCGCCCGG‑ACGGTACCGGGCTGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGA > 1:3974415/1‑150 TCTTCTATCCCATGGTCA‑‑G‑‑‑‑‑TGGCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGA > 2:1019484/1‑150 tCATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACT < 1:5816035/149‑1 ATGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGG > 2:1214080/1‑150 TGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATTGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGC < 1:2118688/150‑1 TGGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGC > 2:5736806/1‑150 GGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCG > 1:5133921/1‑150 GGCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCG < 1:5490734/150‑1 GCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCGC < 1:5464886/150‑1 GCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCGC > 1:5088648/1‑150 GCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCGC > 2:2265515/1‑150 AGCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5759591‑5759743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggCCA‑‑G‑‑‑‑‑GCCCAGCCCGGTACCGT‑CCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGGCGC < NC_002947/5759779‑5759631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |