| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2261669 | 0 (0.000) | 20 (0.070) | 13/268 | NT | 100% | coding (34/1302 nt) | PP_1990 | transposase |
| ? | NC_002947 | = 2418143 | NA (NA) | intergenic (+415/‑6) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase | |||||
TTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTT > NC_002947/2261520‑2261818 | ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC > 2:636558‑M1/1‑150 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC > 2:6142574‑M1/1‑150 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC < 2:5716067‑M1/150‑1 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC < 2:5053689‑M1/150‑1 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC > 1:3950585‑M1/1‑150 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC < 2:4756733‑M1/150‑1 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC > 2:3109183‑M1/1‑150 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC < 1:809242‑M1/150‑1 (MQ=255)ttACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGACAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC < 2:5053964‑M1/150‑1 (MQ=255) cATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCcggcggg < 2:6615653‑M1/150‑8 (MQ=255) gATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccga > 1:3212812‑M1/1‑63 (MQ=255) agaAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCcggagtgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagac > 2:5926808‑M1/1‑57 (MQ=255) gaAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCcggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagacctt > 1:3308331‑M1/1‑56 (MQ=255) aaaaaaGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttg > 1:4462814‑M1/1‑55 (MQ=255) aaaaaaGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttg > 1:4462816‑M1/1‑55 (MQ=255) aaaaaGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCcggagtgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagacctt > 2:4724903‑M1/1‑54 (MQ=255) aaaGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCcggagtgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttga > 2:4744672‑M1/1‑52 (MQ=255) cccGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCcggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatg > 1:2343051‑M1/1‑46 (MQ=255) ccGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatgg > 2:2453195‑M1/1‑45 (MQ=255) ccGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatgg > 1:2896612‑M1/1‑45 (MQ=255) ccGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatgg > 2:416812‑M1/1‑45 (MQ=255) ccGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatgg > 2:6493518‑M1/1‑45 (MQ=255) gCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcc > 2:210857‑M1/1‑43 (MQ=255) cAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccgt > 2:2965746‑M1/1‑41 (MQ=255) cAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaatactaccgaagaccttgaaagggatgaccct > 1:6454191‑M1/1‑41 (MQ=255) gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccctta > 2:4858086‑M1/1‑39 (MQ=255) tAATGGCCAAACTTGCCTTGGAGCAGGCCATTACGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcga < 1:4584275‑M1/113‑78 (MQ=255) tAATGGCCAAACTTGCCTTGGAGCAGGCCATTACGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcga > 2:4584275‑M1/1‑36 (MQ=255) gCCAAACTTGCCTTGGAGCAGGCCATTACGCtggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggt > 2:2767481‑M1/1‑31 (MQ=255) cgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagta < 2:5166447‑M1/150‑148 (MQ=255) cgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagta < 2:5522944‑M1/150‑148 (MQ=255) cgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagta < 2:2126992‑M1/150‑148 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa > 2:4654701‑M1/1‑2 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 2:4894536‑M1/150‑149 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 2:5437518‑M1/150‑149 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 2:2603931‑M1/150‑149 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 1:2607665‑M1/150‑149 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 1:4527385‑M1/150‑149 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 1:4527597‑M1/150‑149 (MQ=255) gctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaa < 1:164201‑M1/150‑149 (MQ=255) ctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaaagtaac < 2:5654598‑M1/150‑150 (MQ=255) | TTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGACGACCTT > NC_002947/2261520‑2261818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |