BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3527694 =	200 (0.680)	29 (0.130) +ATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTC	9/202	NT	13.4%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
*	?	NC_002947	= 4500696	309 (1.050)	29 (0.130) +ATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTC	9/202	NT	13.4%	coding (13/960 nt)	PP_3987	site‑specific recombinase

Only 100 of 446 total aligned reads displayed.

TTCGAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGTCATCCCTGGGAAAATGCCA  >  NC_002947/4500548‑4500845

 tCGAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAg                                                                                                                                                     <  1:2076606/150‑1 (MQ=31)

  cGAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAgc                                                                                                                                                    <  1:2779953/150‑1 (MQ=32)

   gAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGGTCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAgcg                                                                                                                                                   >  1:3616350/1‑150 (MQ=17)

   gAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagc                                                                                                                                                   <  1:3290014‑M2/150‑5 (MQ=255)

   gAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagc                                                                                                                                                   <  2:4711887‑M2/150‑5 (MQ=255)

   gAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAgcg                                                                                                                                                   >  1:4403402/1‑150 (MQ=32)

    aaaGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagcc                                                                                                                                                  <  1:4902183‑M2/150‑6 (MQ=255)

    aaaGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAgcgc                                                                                                                                                  >  2:1075144/1‑150 (MQ=33)

     aaGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCa                                                                                                                                                 <  1:686909/150‑1 (MQ=34)

       gTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaat                                                                                                                                               >  1:2419292‑M2/1‑142 (MQ=255)

         cGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTga                                                                                                                                             <  1:4218223/150‑1 (MQ=38)

          gACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTgag                                                                                                                                            >  1:980807/1‑150 (MQ=38)

           aCGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgcca                                                                                                                                           >  1:4064255‑M2/1‑138 (MQ=255)

             gggCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATc                                                                                                                                         >  2:6700654/1‑150 (MQ=40)

              ggCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATcc                                                                                                                                        <  1:6209723/150‑1 (MQ=255)

              ggCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATcc                                                                                                                                        <  2:5649174/150‑1 (MQ=255)

                     ggTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgc                                                                                                                                 >  2:5986732‑M2/1‑128 (MQ=255)

                       tAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgc                                                                                                                               >  1:1846405‑M2/1‑126 (MQ=255)

                       tAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgc                                                                                                                               >  1:6080824‑M2/1‑126 (MQ=255)

                       tAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgc                                                                                                                               >  2:857080‑M2/1‑126 (MQ=255)

                       tAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTa                                                                                                                               <  2:2936661/150‑1 (MQ=255)

                        agagGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcc                                                                                                                              >  2:871166‑M2/1‑125 (MQ=255)

                        agagGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGGTCATGGAGCGCTTACgagccaatgccaggcctggtgcgcc                                                                                                                              >  2:5439984‑M2/1‑125 (MQ=255)

                           tgtACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgc                                                                                                                           >  2:4127429‑M2/2‑122 (MQ=255)

                            gTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGAc                                                                                                                          >  1:527574/1‑150 (MQ=255)

                             tACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctg                                                                                                                         >  2:5193833‑M2/1‑120 (MQ=255)

                             tACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACt                                                                                                                         >  1:3161850/1‑150 (MQ=255)

                             tACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACt                                                                                                                         >  1:4581433/1‑150 (MQ=255)

                             tACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACt                                                                                                                         <  2:6626107/150‑1 (MQ=255)

                              acacTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTCAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACtt                                                                                                                        >  1:1803898/1‑150 (MQ=255)

                              acacTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctgg                                                                                                                        >  2:3386153‑M2/1‑119 (MQ=255)

                              acacTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACtt                                                                                                                        >  2:6483803/1‑150 (MQ=255)

                               cacTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctgga                                                                                                                       >  1:1393944‑M2/1‑118 (MQ=255)

                                 cTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGa                                                                                                                     <  1:1599120/150‑1 (MQ=255)

                                 cTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGa                                                                                                                     <  1:3338681/150‑1 (MQ=255)

                                  tttttCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGAt                                                                                                                    >  2:2561272/1‑150 (MQ=255)

                                  tttttCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGAt                                                                                                                    <  2:1200949/150‑1 (MQ=255)

                                  tttttCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGAt                                                                                                                    <  2:1427165/150‑1 (MQ=255)

                                   ttttCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcat                                                                                                                   >  2:3477645‑M2/1‑114 (MQ=255)

                                   ttttCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATg                                                                                                                   >  1:2632909/1‑150 (MQ=255)

                                     ttCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTa                                                                                                                 <  1:6667831/150‑1 (MQ=255)

                                       cGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGc                                                                                                               >  1:1635333/1‑150 (MQ=255)

                                        gACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgccca                                                                                                              >  1:2916801‑M2/1‑109 (MQ=255)

                                        gACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgccca                                                                                                              <  2:4221522‑M2/150‑42 (MQ=255)

                                          cTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGaa                                                                                                            >  1:1009794/1‑150 (MQ=255)

                                           tttGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGTGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgcccaggc                                                                                                           >  2:3274599‑M2/1‑106 (MQ=255)

                                           tttGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgcccaggc                                                                                                           <  2:1943700‑M2/150‑45 (MQ=255)

                                              ggCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgcccaggccca                                                                                                        >  1:6148886‑M2/1‑103 (MQ=255)

                                              ggCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAAtt                                                                                                        <  1:6598109/150‑1 (MQ=255)

                                               gCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgcccaggcccat                                                                                                       <  2:818824‑M2/150‑49 (MQ=255)

                                               gCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggag                                                                                                                      <  2:484086‑M2/135‑34 (MQ=255)

                                                 gTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGaa                                                                                                     >  2:264291/1‑150 (MQ=255)

                                                 gTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGaa                                                                                                     <  1:5437817/150‑1 (MQ=255)

                                                         gCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCaa                                                                                             >  2:1013703/1‑150 (MQ=255)

                                                               tGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGa                                                                                       <  2:3962276/150‑1 (MQ=255)

                                                                ggTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGAc                                                                                      <  1:3741272/150‑1 (MQ=255)

                                                                ggTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTGGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGAc                                                                                      <  2:176525/150‑1 (MQ=255)

                                                                   cGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGa                                                                                   <  2:2047164/150‑1 (MQ=255)

                                                                    ggCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGaa                                                                                  >  2:166762/1‑150 (MQ=255)

                                                                      cGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAg                                                                                >  2:5285991/1‑150 (MQ=255)

                                                                       gAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGt                                                                               >  1:1187745/1‑150 (MQ=255)

                                                                           tCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGt                                                                           <  1:5828334/150‑1 (MQ=255)

                                                                            ccAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTg                                                                          <  1:2298875/150‑1 (MQ=255)

                                                                             cAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGc                                                                         >  1:4746955/1‑150 (MQ=255)

                                                                              agaaagaaATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGcc                                                                        >  2:4997903/1‑150 (MQ=255)

                                                                               gaaagaaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCg                                                                       >  2:4882435/1‑150 (MQ=255)

                                                                                aaagaaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGa                                                                      >  1:3960770/1‑150 (MQ=255)

                                                                                aaagaaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGa                                                                      >  1:4698485/1‑150 (MQ=255)

                                                                                aaagaaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGa                                                                      >  1:4264882/1‑150 (MQ=255)

                                                                                  agaaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGaaa                                                                    <  2:6448101/150‑1 (MQ=255)

                                                                                  agaaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGaaa                                                                    <  1:729703/150‑1 (MQ=255)

                                                                                    aaaTCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAAt                                                                  <  2:3828653/150‑1 (MQ=255)

                                                                                             gCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCt                                                         <  2:4023272/150‑1 (MQ=255)

                                                                                                caGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTc                                                                              <  1:3838089/126‑1 (MQ=255)

                                                                                                caGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATGGAGATCCCGCTCGGTACCGACGTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCt                                                      >  1:6414796/1‑150 (MQ=255)

                                                                                                  gCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGGTGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCg                                                    <  2:29991/150‑1 (MQ=255)

                                                                                                       ggggATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGAc                                               >  2:5520701/1‑150 (MQ=255)

                                                                                                         ggATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGt                                             <  2:6804433/150‑1 (MQ=255)

                                                                                                         ggATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGt                                             <  2:2438412/150‑1 (MQ=255)

                                                                                                         ggATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGt                                             <  1:3099521/150‑1 (MQ=255)

                                                                                                           aTCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCt                                           <  2:715173/150‑1 (MQ=255)

                                                                                                            tCAGGTTAGCGCTTTGTATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCAAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCtt                                          <  2:6211298/150‑1 (MQ=255)

                                                                                                            tCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcgttcagcatgtgctcggcgttcagccgcggtgcgttggtcaccacgcacatgccgatg                                          >  1:4497606‑M2/1‑41 (MQ=255)

                                                                                                             cAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTc                                         <  2:3616350/150‑1 (MQ=255)

                                                                                                              aGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCa                                        >  1:1253994/1‑150 (MQ=255)

                                                                                                                       cTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACGTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAACGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCgggagg                               >  2:2789886/1‑146 (MQ=255)

                                                                                                                        tttGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGa                              >  1:2583995/1‑150 (MQ=255)

                                                                                                                        tttGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGa                              >  2:23096/1‑150 (MQ=255)

                                                                                                                          tGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGc                            >  1:1126925/1‑150 (MQ=255)

                                                                                                                            aaTGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGaaaa                                                                                                          >  1:5132387/1‑70 (MQ=255)

                                                                                                                               gtgGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGAt                       <  1:480181/150‑1 (MQ=255)

                                                                                                                                tgGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATg                      >  2:4438041/1‑150 (MQ=255)

                                                                                                                                 ggggTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGTCTTGGATGTAGCGAAAATTGTATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGTCGTCTTCAATCGGTATGAGCGTGATGt                     >  2:5096956/1‑150 (MQ=255)

                                                                                                                                 ggggTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGt                     >  2:5829374/1‑150 (MQ=255)

                                                                                                                                    gTTCATGGAGCGCTTACgagccaatgccaggcctgttgcgcctgctg                                                                                                                         <  2:1574351‑M2/47‑31 (MQ=255)

                                                                                                                                      tCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCTCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGTCATcc                <  1:4963349/150‑1 (MQ=255)

                                                                                                                                        aTGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGTCATCCCt              <  1:5520572/150‑1 (MQ=255)

                                                                                                                                           gAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGTCATCCCTggg           <  2:1253994/150‑1 (MQ=255)

                                                                                                                                                 ttACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGTCATCCCTGGGAAAATg     >  1:5746833/1‑150 (MQ=255)

                                                                                                                                                    cAGCGCATTGAGATCCCTCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCATTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCTATCGGTATGAGCGTGATGTCATCCCTGGGAAAATGCCa  <  1:5895731/150‑1 (MQ=255)

TTCGAAAGTCGACGGGCTTGGGGTAGAGGTACACTTTTTCGACTTTGGCGTCGGGTCGCATCATGGTCGGCGAGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGGATCAGGTAAGCGCTTTGAATGTGGGGTTCATGGAGCGCTTACAGCGCATTGAGATCCCGCTCGGTACCGACTTGGATGTAGCGAAAATTGAATGGGCCAAGCTCGACCGAAAGTCAGTGCCGAAAATCACTCGCCTGCTCGGTGACGTCTTCAATCGGTATGAGCGTGATGTCATCCCTGGGAAAATGCCA  >  NC_002947/4500548‑4500845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.