| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,583,420 | T→A | 6.8% | intergenic (+105/‑219) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,583,420 | 0 | T | A | 6.8% | 741.3 / 11.5 | 257 | intergenic (+105/‑219) | PP_3158/PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (110/119); new base A (20/3); total (135/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 271 total aligned reads displayed.
ACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3583272‑3583569 | aCGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAtt < 1:3443819/150‑1 (MQ=255) cgcgCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttt < 1:4197411/150‑1 (MQ=255) gcgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAtttt < 1:745043/150‑1 (MQ=255) cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 1:4958541/150‑1 (MQ=255) cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 2:287778/150‑1 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 1:2348718/150‑1 (MQ=255) agagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGGGCAACAGGCAATTTTggc > 1:608504/1‑148 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCa < 1:1801006/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGtt > 1:4375095/1‑150 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAAAAATGCCAGtt < 2:5374275/150‑1 (MQ=255) cTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGACAGTTg > 2:6322099/1‑150 (MQ=255) tGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGTCAGTTGCAGc < 1:1702516/150‑1 (MQ=255) gCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACGGGCAGTTTTGCCAGTTGCAGCg > 2:1366987/1‑150 (MQ=255) cTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGACTGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGa < 2:4173058/150‑1 (MQ=255) cTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGa < 2:575127/150‑1 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAg < 1:5503684/150‑1 (MQ=255) gatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCCTTTTTGCCAGTTGCAGCGAgt > 2:5347567/1‑150 (MQ=255) gatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAgt > 2:3340530/1‑150 (MQ=255) ttaaCTTCCTGCCGGTGCTTTAATAGGCCTCTGCCGCACGCCCTTTGCTAAATGCCCATACATGAATGAGGATTGAGTTTATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAgtgt < 2:1923563/148‑1 (MQ=255) tgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGAAGCGGgtgt > 2:4631488/1‑150 (MQ=255) aaCTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATTAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGT‑At < 1:539879/150‑1 (MQ=255) aaCTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGACTCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑At < 2:2225099/150‑1 (MQ=255) cTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATTAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGa < 1:5089932/150‑1 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGAGT‑ATGAc > 2:5221699/1‑150 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATGTTTGCCAGTTGCAGCGAGGGT‑ATGAc > 1:6584026/1‑150 (MQ=255) ccGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTa < 2:3312716/150‑1 (MQ=255) cGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTTCAGCGAGTGT‑ATGACAGCCGAg > 2:158897/1‑150 (MQ=255) gTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAAGTGCAGCGAGTGT‑ATTACAGCCGAGaa > 1:837312/1‑150 (MQ=255) gCAGTAAGAGGCCTCGGCCGCACGCCCTTTGCTAAATGCCCATACATGAATGAGGATTGAGTTTTTGAGTGTTCATGAGCGAATCAAGGTTTCGTCGGGCTGCTACTGGCTTTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAAtt < 1:4837516/150‑1 (MQ=255) aGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCa < 2:6084916/150‑1 (MQ=255) ttAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGTATTGATTTGATGAGTTTTCATGCGCTAATAAAGGTTTCGTCGGGCTGCAACTGGAATTTTTGCAAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCaa < 1:427952/149‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTGGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCaa < 1:5614791/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCATTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGGGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCaa < 2:824712/150‑1 (MQ=255) tAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGCATTTTTGCCAGGTGCAGCGAGTGT‑ATTACAGCCGAGAATTCAAg > 1:2805142/1‑150 (MQ=255) atgagGCCTCTGCCGAACGCCCTTTGCTAATTGCCAATACATTAATGATTATTTAGTTGATGTGTGTTAATGAGCTAATAAACGTTTCTTCGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAgg < 1:3243892/148‑1 (MQ=255) aaGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGTTTGAGTTGATGAGTGTTCATGTGCGAATAAAGGTTTCTTCGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAgg < 1:4853908/150‑1 (MQ=255) gagGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGGTGCAGCGAGTGT‑ATGACAGCCGAGAATTCAAGGGa > 2:6259951/1‑150 (MQ=255) ggCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGTTTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGaaa < 2:4921715/150‑1 (MQ=255) ggCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTTAGTTTCTGTGTGTTCTTGAGCTAATCAACGTTTCGTGGGGCTGCAACTGGAATTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGaaa < 1:1338216/150‑1 (MQ=255) gCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAAt < 2:4990160/150‑1 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCCGTTGCAGCGCGTGT‑ATGACAGCCTCGAATTCAAGGGAACTGgt > 2:4484954/1‑150 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCGGCGAGTGT‑ATGACAGCCGAGAATTCAAGGGAAATGgt > 2:5633711/1‑150 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGgt > 2:5015100/1‑150 (MQ=255) ctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCATTTTTGCCACTTGCAGCGAGTGT‑ATTTCAGCCTAGAATTCAAGGGAAATtgtg > 1:1583845/1‑150 (MQ=255) ccGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGCAATGGTGTtc > 2:1083139/1‑150 (MQ=255) gCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGGATTTTTTGCAGTTTCAGCGGGTGT‑ATTAAAGCCGAGAATTAAAGGGGAATGGGGTtctc > 1:1207804/1‑150 (MQ=255) cGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTaa < 2:1293108/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGACTGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAAGGTTTCGTGGGGCTGCAACGGGCATTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 1:4019192/150‑1 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAAt < 1:2713571/135‑1 (MQ=255) cTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGGCACTGGCAGGTTTTCCAGTTGCAGCGCCGGT‑GTGACAGCCGACAAATCAAGGGAAATGGGGTGCGCTAACGTc > 1:1479385/1‑150 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTGCCAGTTTCAGCGAGTGT‑ATGACAGCCAAGAAATAAAGGGAAATGGTGTTGTATAAGGTCa > 2:1876791/1‑150 (MQ=255) ttGCGAAATGCCCATACATGAATGAGTATTGTGTTGATGTTTGTTCTTGAGAGAATCATGGTTTCTTCGGGCTGAAACTGGCTTTTTTGCCAGTTGCTGAGAGTGT‑ATGACAGCATAGAATTCAAGGGAAATTGTGTTCTCTAAGGTCAt < 2:3896050/150‑1 (MQ=255) ttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAGTTTTGCCACTTGCAGCGAGTGT‑TTGACAGCCGAGAATTCCAGGGGACTGGTGTTGTCGAAGGTCAt > 1:6400866/1‑150 (MQ=255) tGCGAAAGGCCCATACATGATTGAGTATTGAGTTGATGAGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCAtt < 1:4078364/150‑1 (MQ=255) cGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCCGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAATGGAAATGGTGTTATCTAAGGTCAATaa > 2:1556571/1‑150 (MQ=255) aactGCCCATACATGAATGAGGATTGAGTTTATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATc < 1:3331990/147‑1 (MQ=255) aaaTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATc < 2:3905530/150‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:1106301/150‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCATCTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:956059/150‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:5698456/150‑1 (MQ=255) gCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGa < 1:3576673/150‑1 (MQ=255) ccATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCACTTGCAGCGCGTGT‑ATGACAGCCTAGAATTAAAGGGAAATGGTGTTGTCTAAGGTGATTAATCGTGgaa > 2:5912941/1‑150 (MQ=255) cATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCAATTTTTCCAGTTTAAGCGAGTGT‑ATTAAAACCAAGAAATAAAAGGAAAATGGGTTATGTAAGGTGCTTTATAGTGAAAc > 1:5184347/1‑150 (MQ=255) cATGAATGAGTATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 2:1410462/150‑1 (MQ=255) atgaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACATGCAATTTTTCCACTTTCAGCGAGTGT‑ATGTCAGCCGAGAATTGAACGGGAATGGTGTTATGTAAGGTCAATAAAAGTGTAACGttag > 1:3091022/1‑148 (MQ=255) atgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAGTGT‑ATTTCAGCCTAGAATTCAAGGGAAATGGTGTTATCTAATGTCATTAATCGTGAAAACTTAGCAAg > 1:4547522/1‑150 (MQ=255) tgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTGCACCGAGTGT‑ATTACAGCCAAGAATTAAAGGGAAAGTGTGTTCTCTAAGGTCATTAAACGTGAAAAGTTAGCAAGc > 2:5869808/1‑150 (MQ=255) tgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCAGTTTCAGCGAGTGT‑ATGACAGCCGAGAAATCAAGGGAAATGGTGTTCTGTAAGGTCATTAATAGTGAAAAGTTCGCaacc > 1:4475716/1‑148 (MQ=255) gaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCAGTTGCAGCGAGTGTAATGA‑AGCCAAGAAATCAAGGGAAAATGTGTTCTCTAAGGTCAATAATAGTGAAACGTTAGCAATCg > 2:1484942/1‑150 (MQ=255) gATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTAAATGGAAATGGTGTTCTCTAAGGTCATTAATAGTGAAACGTTCGCAAGCGTac > 2:3991155/1‑150 (MQ=255) aTTTAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCAAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTaca < 1:859056/150‑1 (MQ=255) tGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCATTTTTTCCAGTTTAAGCCAGTTT‑ATTACAGCCAAGAAATAAAGGGAAAAGGTGTTGTCTAAGGTCAATAATAGTGAAACGTTAGCAAGCGTacacc > 2:2380134/1‑149 (MQ=255) gAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGc < 2:4271715/150‑1 (MQ=255) aGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTGCAGTTGCAGCGAGTGT‑ATTACAGCCAAGAATTCAAGGGAAATGGTGTTGTCTAAGGTCATTAATAGTGATAAGTTAGCAAGCGTACACGcc > 2:4824062/1‑150 (MQ=255) gTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTAAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGccc > 2:5475781/1‑150 (MQ=255) gTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAATTTTTCCACTTGCAGCGAGTGT‑ATTAAAGCCAAGAATTAAAGGGAAATTGTTTTATCTAAGGTCATTAAAAGTGAAACCTTAGCAACCGTAAACcccc > 1:3911565/1‑150 (MQ=255) tgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCCGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCGACgg > 2:2064216/1‑150 (MQ=255) tgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACgg < 2:2289199/150‑1 (MQ=255) gaGTGTTCATGAGCGAATAAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGgc < 1:2918131/150‑1 (MQ=255) gAGCGAATAAACGTTTCGTCGGGCTGAAACTGGAATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 1:1415025/150‑1 (MQ=255) aaTCAACGTTTCGTCGGGCTGCAACTGGCAATTTTGCCAGTTGCCGCCAGTGT‑ATGACAGCCAAGAAATCCACGGAAAAGGTGTTCTCGAAGGTCCTTAAACGGGAAACCGTCCCAAGCGGACACCCCCGACCGCGCGAGGTGGGGTGAt > 2:2529198/1‑150 (MQ=255) aTCACCGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATg < 1:2197835/150‑1 (MQ=255) aTCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAAATCAAGGGAAATGGTGTTATCTAAGGTCATTAATCGTGAAAAGTTAGCAAGCGTACACGCCCTAAGGCGCGATTTGGGgtggtg > 1:6835553/1‑150 (MQ=255) tCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCCGGTGCAGCGAGTGT‑ATGACAGCCGAGAATTAAAGGGAAATTGTGTTCTCGAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATgg > 2:533449/1‑150 (MQ=255) cGTTTCGTGGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCAt < 1:6303999/150‑1 (MQ=255) cTGCAACTGGCATTTTTGCCAGTTGCGGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTCCGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTg < 2:4375095/150‑1 (MQ=255) cTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTg > 2:5083538/1‑150 (MQ=255) tGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:6227153/1‑150 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 2:3803353/150‑1 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:6489885/150‑1 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGt > 1:3688941/1‑150 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGt > 2:5412467/1‑150 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATGTGGGGTGATGGCCATTGCTCCGTGTTGAAGt > 2:1634130/1‑150 (MQ=255) ctggattttttGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTAc < 1:5441386/144‑1 (MQ=255) cTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTAc < 1:4059538/150‑1 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:3489037/1‑150 (MQ=255) gCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAAt > 2:1035978/1‑150 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGACGTACAATgg > 1:3807382/1‑150 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATgg < 2:6837255/150‑1 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATgg > 1:59850/1‑150 (MQ=255) | ACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGT‑ATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3583272‑3583569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |