| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,901,416 | T→C | 5.4% | intergenic (+55/‑153) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,901,416 | 0 | T | C | 5.4% | 792.6 / 21.8 | 264 | intergenic (+55/‑153) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (115/122); new base C (9/5); total (132/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.29e-01 | |||||||||||
Only 100 of 268 total aligned reads displayed.
AGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGC > NC_002947/4901270‑4901565 | agcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCgcgca < 2:2985206/150‑2 (MQ=255) gcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc < 1:175137/150‑1 (MQ=255) aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCgg < 2:4009886/150‑1 (MQ=255) aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGTCGCGGGTAAAACCGCGCCGACAGGCGCGGACCGGGCGCgg > 1:424158/1‑150 (MQ=255) aTTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGCCCGTGCGCGGTcc > 2:4753859/1‑150 (MQ=255) ttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑cc‑c > 1:2221632‑M1/94‑150 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑cc‑c < 1:1889185/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTa < 1:6451870/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTa < 2:6410498/150‑1 (MQ=255) agggtgttggggcagattgccagcgacgataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAg > 1:1403676‑M1/90‑150 (MQ=255) ggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGa > 1:3404162‑M1/88‑150 (MQ=255) gtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAg > 1:5240021‑M1/87‑150 (MQ=255) tgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGc > 2:182309‑M1/86‑150 (MQ=255) tgttggggcagagggccagcgactatcacgggtgggtgtagacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGc > 2:4228274‑M1/86‑150 (MQ=255) gttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCg > 2:2086741‑M1/85‑150 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCgg > 1:6017856‑M1/84‑150 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCgg < 1:700696/150‑1 (MQ=255) tggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCggg > 1:6321769‑M1/83‑150 (MQ=255) cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCggg < 2:1459117/150‑1 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGt > 1:3934811‑M1/82‑150 (MQ=255) caAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGGGGACCGCGCACGGTccgcgc < 1:1940715/138‑5 (MQ=255) caAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtt > 1:4047014‑M2/1‑148 (MQ=255) ggcagagtgccagcgactataccgggtgggtttatacgggttaaagaacaaaaaatgcttgggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGGCC‑‑‑CC‑C‑‑GTAGGAGCGGGttt > 2:6627537‑M1/80‑150 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGttt > 2:1559366‑M2/1‑147 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGAtttac > 2:502363‑M2/1‑145 (MQ=255) cagattgccagcgactataccgggtgggtttatacgggttacagaacaaaaaatgctttggttatgcttctgcctgtGCCGACCTCTTCGCGGGTACATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTAc > 2:2629450‑M1/78‑150 (MQ=255) aagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGAtttacc > 1:946898‑M2/1‑144 (MQ=255) gccagcgactataacgggtgggtttatacgggttaaagaacaaaaactgctttggttatgcttgtgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCATACAGGCGCGGACGGTGCGAGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGa > 1:5761330‑M1/72‑150 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcga > 1:2733610‑M2/1‑139 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCCCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑CTAGGAGCGGGtttacccgcga < 2:953578‑M2/150‑12 (MQ=255) ccagcgactataacgggtgtgtttattcgggttaaagaacaaacaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGaa > 2:1802568‑M1/71‑150 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaaga > 2:2914004‑M2/1‑136 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaaga > 2:3566668‑M2/1‑136 (MQ=255) gAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGAtttacccgcgaagag > 1:5207203‑M2/1‑135 (MQ=255) aGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATACGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagagg < 2:6698582‑M2/150‑17 (MQ=255) tgtgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa > 2:2218101/1‑150 (MQ=255) gAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATACGCTCCAACAGGCGCGGACCCTGCGCGGTCC‑‑‑CC‑C‑‑GGAGGAGCGGGGTTACCCGCGAAGAGGCCGGCACACGCAGAAGCATGACCAAAGCAtt > 2:2875483/1‑150 (MQ=39) ttgttTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTAACCGCGAAGAGGCCGGCACACGCAGAAGCATAACCCAAGCATtttttttt > 2:5252421/1‑150 (MQ=255) tttCCCAACGCGTGATCGCGCGTGCGCGGGCCTGTTCGCGGGTAAATCCGCACCTCCAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑G‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCtt < 1:5551522/150‑1 (MQ=38) tttCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGGAAATACGCTCCAACCGGCGCGGACCCTGCGCGGTCC‑‑‑CC‑C‑‑CTAGGAGCGGGTTTACCCCCGCACAGGCCGGCCCAGGCAGAAGCATAACCCAAGCATTTTTTGTTAtt > 2:1935089/1‑150 (MQ=255) aaaGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCCCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGCAGAGGCCGGCCCAGGCAGAAGCCTAACCAAAGCATTTTTTGTTATTTTAccc > 2:5770560/1‑150 (MQ=38) gATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGTAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATaaa < 1:4464565/150‑1 (MQ=255) aTAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAACGCATTTTTTGTTCTTTAACCCGTATAAac < 2:6135767/150‑1 (MQ=255) ccTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGCCCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAacccaccc < 1:6728924/150‑1 (MQ=255) ccTGCGCCGGCCGCTTCGCGGGTAAATACCCTCCGACAGGCGCGGCCCGGGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCCCGAAGAGGCCGGCCCAGGCAGAATCCTAACCAAAGCAATTTTTGTTCTTTAACCCGGATAAacccaccc > 2:3755155/1‑150 (MQ=37) tGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGt < 2:5553733/150‑1 (MQ=255) cgcgGGCCTCTGCGGGGTAAAAGCCGCACCCCCCGGCGCGGACGGGGCGGGGCCC‑‑‑CC‑C‑‑GTCGGAGGGGTTTTCCCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta < 1:1994034/150‑1 (MQ=255) CGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAg < 2:5627076‑M1/150‑1 (MQ=255) GCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTc < 1:1104050‑M1/150‑1 (MQ=255) GCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTc < 1:4746502‑M1/150‑1 (MQ=255) CTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc < 1:2265289‑M1/150‑1 (MQ=255) tctTCGGGTGTAACTCCGCTCCCCCTGGGGGGCCCCGTGGGGGGCCC‑‑‑CC‑G‑‑TTCGGTGGGGTTTTCCCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCt < 1:3019206/150‑1 (MQ=255) TCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTT‑GTTCTTTAACCCGTATAAACCCACCCGGTATAGTCGCTg < 2:6383067‑M1/150‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTgg < 1:3795732‑M1/150‑1 (MQ=255) TCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGc < 2:12143‑M1/150‑1 (MQ=255) GCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTa < 2:5876654‑M1/48‑1 (MQ=255) GTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTg < 1:4804731‑M1/150‑1 (MQ=255) GTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTg < 2:3313628‑M1/150‑1 (MQ=255) TAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGc > 2:5058973‑M1/1‑150 (MQ=255) TAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGc < 2:6865378‑M1/150‑1 (MQ=255) AAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGcc < 1:2706965‑M1/150‑1 (MQ=255) aTCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcacaggcactatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgggggtcttcttgt < 2:4182500‑M2/150‑103 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:4115953‑M2/150‑104 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:1265143/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:1017357/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:822864/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:712623‑M2/150‑104 (MQ=255) tCCGCTCATACAGGCGCTGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GAAGGAGCGCGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGATATAGTCTCTGGCAATATGCCCCa > 2:2322260/1‑150 (MQ=255) ccGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCaa > 1:5605391/1‑150 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:3142060‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCAt < 1:2151497/79‑1 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca > 2:3621460/1‑150 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 1:178421‑M2/150‑107 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:2511667‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 1:4684810‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 1:359621‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:3466489‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 1:3117639/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 2:5672553/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:4599358‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:5794270‑M2/150‑109 (MQ=255) ccTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggt < 2:4940375‑M2/150‑110 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtc < 2:6419533‑M2/150‑111 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtc < 2:5429833‑M2/150‑111 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 1:5399210/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtc < 1:6254944‑M2/150‑111 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgcc < 2:904762‑M2/117‑78 (MQ=255) tACGGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCtt > 2:3242106/1‑150 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCGCCTGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:2097896‑M2/150‑109 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgg > 1:2430284‑M2/1‑39 (MQ=255) actggCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGTGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTc < 1:5639780/147‑1 (MQ=255) aCAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTc < 2:6019068/150‑1 (MQ=255) cAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcggg < 2:6471695‑M2/150‑114 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGGTGACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCCAAGCCTGTTTTGGTCTTTAACCCGGCTAACCCCACCCGGGATAGTCGCTGGCCATCTGCCCCACCACCCTTCac > 2:4398506/1‑149 (MQ=255) gcgcGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaa < 1:5707468‑M2/150‑117 (MQ=255) gggggACCGCGCACGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGaa > 2:3054096/4‑150 (MQ=255) cgcgGACCGTGCGCGGTCC‑‑‑CC‑G‑‑TTTGGCGGGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGaa < 1:2543246/150‑1 (MQ=255) ggcccGGGCGCGGTCC‑‑‑CC‑C‑‑TTTGGTGCGGGTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa < 1:3482183/147‑1 (MQ=255) ggACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa > 1:67772/1‑150 (MQ=255) tGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGc > 2:4825803/1‑150 (MQ=255) | AGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGC > NC_002947/4901270‑4901565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |