| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,901,439 | G→A | 12.7% | intergenic (+78/‑130) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,901,439 | 0 | G | A | 12.7% | 559.9 / 61.5 | 228 | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (109/80); new base A (8/20); total (118/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.70e-01 | |||||||||||
Only 100 of 236 total aligned reads displayed.
CACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGC > NC_002947/4901290‑4901588 | tggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCggg > 2:4787740‑M1/83‑150 (MQ=255)cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTCCAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCggg < 1:2915054/150‑1 (MQ=255)cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCggg < 2:1459117/150‑1 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGt > 1:4066548‑M1/82‑150 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGt > 1:3934811‑M1/82‑150 (MQ=255) ggcagagtgccagcgactataccgggtgggtttatacgggttaaagaacaaaaaatgcttgggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGGCC‑‑‑CC‑C‑‑GTAGGAGCGGGttt > 2:6627537‑M1/80‑150 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGttt > 2:1559366‑M2/1‑147 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGttt < 2:5551522‑M2/150‑4 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGGCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttac > 1:6175826‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttac > 2:2916817‑M2/1‑145 (MQ=255) aCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTGGCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCGTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGattacccgc > 2:3691219‑M2/1‑141 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcga > 1:2733610‑M2/1‑139 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcga > 2:3226263‑M2/1‑139 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcga > 1:5905467‑M2/1‑139 (MQ=255) cACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCGACAGGCGCGGACCCTGCGCGGGCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaa < 2:49458‑M2/150‑13 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaaga > 2:2913140‑M2/1‑136 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaaga > 2:3566668‑M2/1‑136 (MQ=255) cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCCGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaaga > 2:4194201‑M2/1‑136 (MQ=255) gAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGAtttacccgcgaagag > 1:5207203‑M2/1‑135 (MQ=255) gAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGAtttacccgcgaagag > 2:2614220‑M2/1‑135 (MQ=255) aGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATACGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagagg < 2:6698582‑M2/150‑17 (MQ=255) aGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGTCGCGGGTCAAGACCCGACGAAAGGGGCGGGCCGGGCGCGGGGC‑‑‑CC‑C‑‑CGGGGAGCGGGGTTTGCcgccgcgcgg > 1:6530319/1‑143 (MQ=255) tcGCTGTGGGATTGGGTTGTTTCCCAACGGGTGATCGCGCCTGCGCGGGCCTCTTCGCGGGTAAATCCGCTCCTCCCGGCGCGGACGGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAc < 2:3993089/150‑1 (MQ=38) gCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCa < 2:5018422/150‑1 (MQ=255) ggtgGGACTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa < 2:6125700/149‑1 (MQ=255) gAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATACGCTCCAACAGGCGCGGACCCTGCGCGGTCC‑‑‑CC‑C‑‑GGAGGAGCGGGGTTACCCGCGAAGAGGCCGGCACACGCAGAAGCATGACCAAAGCAtt > 2:2875483/1‑150 (MQ=39) ggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTg < 2:4566024/150‑1 (MQ=255) tttCCCAACGCGTGATCGCGCGTGCGCGGGCCTGTTCGCGGGTAAATCCGCACCTCCAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑G‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCtt < 1:5551522/150‑1 (MQ=38) tttCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaa > 1:5645155‑M2/1‑93 (MQ=255) tCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCCCTCCTACAGGCGCGGACCCTGCGCCGGCC‑‑‑CC‑C‑‑GGAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTa > 2:6367229/1‑150 (MQ=38) aaaGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCCCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGCAGAGGCCGGCCCAGGCAGAAGCCTAACCAAAGCATTTTTTGTTATTTTAccc > 2:5770560/1‑150 (MQ=38) aaGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGTAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTATTTAACCCg > 2:5044038/1‑150 (MQ=255) ccggggccgccATCTGCGGGGTTAACCCCGCTCCTCCCGGCGGGGCCCGGGCGCGGTCC‑‑‑CC‑C‑‑GTCGGCGGGTTTTTCCCCGCTAAGTGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAacccaccc < 1:1944282/145‑1 (MQ=255) ccTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGCCCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAacccaccc < 1:6728924/150‑1 (MQ=255) gcgcCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGtt < 2:1579864/150‑1 (MQ=255) CGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAg < 2:5627076‑M1/150‑1 (MQ=255) GCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTc < 1:1104050‑M1/150‑1 (MQ=255) CTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGc < 1:2265289‑M1/150‑1 (MQ=255) CGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAAt < 2:2088151‑M1/150‑1 (MQ=255) GGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 1:251046‑M1/150‑1 (MQ=255) GTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTg < 1:4804731‑M1/150‑1 (MQ=255) GTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGCC‑T‑‑GTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTg < 2:3313628‑M1/150‑1 (MQ=255) TAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGc > 1:5610225‑M1/1‑150 (MQ=255) TAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGc < 2:6865378‑M1/150‑1 (MQ=255) AAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGcc < 1:2706965‑M1/150‑1 (MQ=255) ATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGcccc < 1:6435252‑M1/150‑1 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 1:3405456‑M2/150‑104 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:4115953‑M2/150‑104 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 1:4388327‑M2/150‑104 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:1265143/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:1017357/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:1215421/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:712623‑M2/150‑104 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgt < 2:1901893‑M2/149‑103 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgt > 1:1901893‑M2/1‑47 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:3142060‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCAt < 1:2151497/79‑1 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca > 2:3621460/1‑150 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:3444504‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 1:5281493‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 1:178421‑M2/150‑107 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:2511667‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAGAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 2:5973721/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 1:3117639/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 2:5831174/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 2:5672553/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:5794270‑M2/150‑109 (MQ=255) cctcccggCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAccc < 2:1807754/144‑1 (MQ=255) ccTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAccc > 1:2186660/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtc < 2:6419533‑M2/150‑111 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 2:639248/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 1:859110/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 2:3057609/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgcc < 2:904762‑M2/117‑78 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CCGCCTGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:2097896‑M2/150‑109 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcg < 1:3501634‑M2/150‑112 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCtt > 1:4626395/1‑150 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgg < 2:2430284‑M2/131‑93 (MQ=255) aCAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgg < 2:5380968‑M2/150‑113 (MQ=255) cAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcggg < 2:6471695‑M2/150‑114 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa > 1:4739445/1‑150 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa > 2:4165508/1‑150 (MQ=255) gcgcGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaa > 2:946898‑M2/1‑34 (MQ=255) gcgcGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaa < 1:5707468‑M2/150‑117 (MQ=255) cgcgGACCGTGCGCGGTCC‑‑‑CC‑G‑‑TTTGGCGGGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGaa < 1:2543246/150‑1 (MQ=255) ggACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa > 1:67772/1‑150 (MQ=255) ggACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa > 2:4640129/1‑150 (MQ=255) gACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAg > 1:3686313/1‑150 (MQ=255) cGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGAc > 1:6292957/1‑150 (MQ=255) ggcgGGCC‑‑‑CC‑C‑‑GTTGGCGGGGGTTTACCCGCGATGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCaa < 1:131337/149‑1 (MQ=255) tCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGa < 2:218122/150‑1 (MQ=255) c‑‑‑cc‑c‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGaaa > 1:3265503/1‑150 (MQ=255) c‑‑‑cc‑c‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGaaa > 2:4361279/1‑150 (MQ=255) cc‑c‑‑GTAGGAGCGGGATTACCCGCGAAGAGGCCGGCACAGGCAGAAGCAAAACCAAAGCAATTTTTGTAATATAACCCTTATAAACCCACACGTTATAGAAGCTGGCAATCTGCACCAACACCCTTCAAGAACAAGGACGCAACGTGaaaa > 2:1040032/1‑150 (MQ=38) c‑c‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGaaaaa > 1:4874504/1‑150 (MQ=255) gCGGGTTTACCCGCGAAGAGGCCGGCACAGTCAGAAGCATAACCAAAGCATTTTTTGTACTTTATCCCGTATAAACCCACCCGTTATAGACGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGCAAATACTCTTCa > 2:5131128/1‑150 (MQ=255) gCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCa > 2:791745/1‑150 (MQ=255) ggtttacccgcgaagaggccggcacaggcactatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaatcatgctgcagctgctccccacgcaaggcatt < 2:4835535‑M2/150‑149 (MQ=255) gTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGc < 1:5252421/150‑1 (MQ=255) gTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGc > 1:4760002/1‑150 (MQ=255) | CACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑CC‑C‑‑GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGC > NC_002947/4901290‑4901588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |