| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,105,035 | A→G | 5.2% | intergenic (+124/+29) | PP_4488 → / ← phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,105,035 | 0 | A | G | 5.2% | 618.2 / 13.7 | 193 | intergenic (+124/+29) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (92/89); new base G (8/2); total (102/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
GGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTCCAGC > NC_002947/5104888‑5105184 | gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCGCAGCCAGAGCACCGCGTATTACCTGTGGGAGCGGCCGTGTGTCGCGCAAGGACTGCAAc > 2:4488498/1‑150 (MQ=255) ctgctCCACCGGCTGATACCTGGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑ccc < 2:348812/150‑1 (MQ=255) tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCAATCGCGGCGCAAGGCCGCGCCCCCCGCTAATGCGCGCAGCCCGAGCAAAGCGGATTAACAGTTGGGGCGGCCGTGTGTAGCGGAAGGGCGGCAACCCAGTACCCAgt > 2:1746589/1‑149 (MQ=255) aaCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCACCCACAGATAAATAGCTCAGCCAGATCAAAGCGTATTAACAGTTGGAGCGGCCTTGTGTGGCGAAAGGAAAGCAACGCAGT‑AACAGGttgt > 2:2361915/1‑148 (MQ=255) aCGGCTTATACCTTGGAAGGGGGGGCCCGGCGGGCCCCTATCGCCACACACGGCCGCTCCCACATATAATGCGCTCAGCCAGAGCACAGGGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCtt < 1:5500952/150‑1 (MQ=38) cGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACCGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCttt < 2:931477/150‑1 (MQ=255) cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACCCAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGAc < 2:499415/150‑1 (MQ=255) cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGAc < 1:4456285/150‑1 (MQ=255) cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGAc < 2:6800893/150‑1 (MQ=255) cTGATACCTTGGAAGCGGGGGCCCGGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATACTGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGAc < 2:4764088/150‑1 (MQ=255) aTACCTTGGAAGCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATACTGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACcaa < 2:2267237/150‑1 (MQ=255) tACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACTGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACcaac < 2:3577018/150‑1 (MQ=255) cTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCaacaac < 2:6317186/150‑1 (MQ=255) cTTGGAATCGGGGGCCCGGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATAATGCGCTCAGCCAGCGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCaacaac < 1:2191757/150‑1 (MQ=255) ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATccgccg > 2:2935704/1‑150 (MQ=255) ggggCCCGCAGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGCGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATccgccg > 2:6588798/1‑150 (MQ=255) cccggggggCCCCTATCGCGACCCCCGGCCGCCCCCACCTATACGGCGCTCCGCCAGAGCACTGGTTTTTACGTGTGGGCGGGGCCTTGGGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACtt < 1:3076201/144‑1 (MQ=255) tGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACAAATACGCCGACTTGtt > 2:1732468/1‑150 (MQ=255) gggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTACTCCGCCGACTTGTTAAg > 2:5152428/1‑150 (MQ=255) ggCCCCTATCGCGACACACGGCCGCTCCCACAGATACTGCGCTCAGCCTGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc < 2:4582208/150‑1 (MQ=255) ggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGTGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc < 1:5050264/150‑1 (MQ=255) ccccTATCGCGACACACGGCCGCTCCCACAGATACTGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa < 2:2657602/150‑1 (MQ=255) ccccTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa < 2:1105757/150‑1 (MQ=255) ccccTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa < 2:5049286/150‑1 (MQ=255) ccccTAGCGCGCCCCCCGGCCGCTCCCACAGATAATGCGCTCACCCTTAGAACAGGTTTTTACCTGTGGGCGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa < 1:160858/150‑1 (MQ=255) aTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAt < 2:6758047/150‑1 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATc < 2:5096536/150‑1 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATc < 2:5096546/150‑1 (MQ=255) cgcgACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTTACCAACAAAAAAACCGCCGACTTGTTAATCGAGTAATcc > 1:3864346/1‑150 (MQ=38) cgcgACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATcc < 2:1617273/150‑1 (MQ=255) gcgACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATccc > 1:4467789/1‑150 (MQ=255) aaGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGTACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACtt > 2:3695649/1‑150 (MQ=255) ggCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgt > 1:2936373/1‑150 (MQ=255) gCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACCGCGTATTACCTGTGGGAGCGGCCTTGGGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt < 1:2662916/150‑1 (MQ=255) gCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt < 2:260872/150‑1 (MQ=255) gCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt > 2:1071593/1‑150 (MQ=255) cgatCCCACAGATAATGCGCTCTGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCTAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCTAGTAATCCCTCAACTTGTTgg < 2:5158154/147‑1 (MQ=255) cGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTgg > 2:6150678/1‑150 (MQ=255) tCCCACAGATAATGCGCTCCGCCAGAGCACTGCGTATTACGTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCaa < 1:4681563/150‑1 (MQ=255) ccccACAGATATGGCGCACAGCCATAGAACAGGTTTTTACGTGTGGGAGCGGCCTTGTGCCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGCCTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCaa < 1:1746589/149‑1 (MQ=255) ccACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAAtt > 2:1101085/1‑150 (MQ=255) cacaGATAATGCTCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTg > 1:6198059/1‑150 (MQ=255) caGATAATGCGCTCAGCCAGAGCACAGCGTAGTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTc < 2:5261753/150‑1 (MQ=255) aGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCg > 1:6521346/1‑150 (MQ=255) gATAATGCGCTCCGCCAGAGCACAGCGTTTTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgt < 1:4136972/150‑1 (MQ=255) tattGCGCTCCGCCCGAGCACTGCTTATTACCTGTGGGCGCGGCATTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgtgt < 1:1841787/147‑1 (MQ=255) tAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgtgt < 1:1071593/150‑1 (MQ=255) aaTGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGtgtg < 1:6122102/150‑1 (MQ=255) tGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCg > 2:3412426/1‑150 (MQ=255) tCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATccgc < 1:6301794/95‑1 (MQ=255) tCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgt > 1:2606592/1‑140 (MQ=255) tCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAaca > 1:3101634/1‑150 (MQ=255) ccAGAGCACAGCTTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCa < 2:4907616/150‑1 (MQ=255) ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTaa < 2:1422836/86‑1 (MQ=255) ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTaa > 1:1422836/1‑86 (MQ=255) ctgagCACAGCTTATTACCGGGGGGAGCGGCCTTGTGCCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg < 1:5732469/148‑1 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 2:5505831/1‑150 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTACAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 1:3129551/1‑150 (MQ=255) agagCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGt > 1:1958458/1‑150 (MQ=255) gagCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTc > 1:5880122/1‑150 (MQ=255) gCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtt < 1:2912765/150‑1 (MQ=255) cacaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCttt < 2:6857023/150‑1 (MQ=255) accgCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt < 1:4045896/147‑1 (MQ=255) acaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt < 1:2543133/150‑1 (MQ=255) gTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCa > 2:2321150/1‑150 (MQ=255) ttACCTGTGGTCGCGGCATTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAgg < 1:2309921/150‑1 (MQ=255) gcTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAATAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGccc > 2:1963872/2‑150 (MQ=255) ccTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGccc < 2:1482154/150‑1 (MQ=255) cTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCg > 1:5569794/1‑150 (MQ=255) tgtgGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGa > 2:4171558/1‑150 (MQ=255) tgGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGact > 2:5492342/1‑150 (MQ=255) ggAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGactac < 2:2976661/150‑1 (MQ=255) aGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTg > 1:6628667/1‑150 (MQ=255) aGCGGCCTTGTGTCGCGAAAGGACAGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTg < 1:1036519/150‑1 (MQ=255) gCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTgg < 1:6515941/150‑1 (MQ=255) gCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGaa > 1:3763249/1‑150 (MQ=255) gCCTCGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGaa > 2:4660975/1‑150 (MQ=255) ccTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt < 2:1794274/93‑1 (MQ=255) ccTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGaaa > 1:5691809/1‑150 (MQ=255) cTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAAc < 1:6264949/150‑1 (MQ=255) gtgtCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcc < 1:2324822/150‑1 (MQ=255) gtgtCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcc < 1:1682778/150‑1 (MQ=255) tCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTccccc > 1:948768/1‑150 (MQ=255) cgcgAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCa < 2:2845450/150‑1 (MQ=255) cgAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATc > 2:5741310/1‑150 (MQ=255) cgAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATc < 1:2361915/150‑1 (MQ=255) gAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCa > 1:3694757/1‑150 (MQ=255) aaaGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTATTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaa > 1:1584192/1‑150 (MQ=255) tgggACTGCGTTGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGACACTCCCCCATCaaa > 2:3775077/3‑150 (MQ=255) tgggACTGCGTTGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaaa > 2:1167340/3‑150 (MQ=255) aaGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaaa < 1:6422765/150‑1 (MQ=255) cTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTc < 1:6303358/150‑1 (MQ=255) cTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTc > 2:3356529/1‑150 (MQ=255) tGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 1:298831/1‑150 (MQ=255) tGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 2:6007715/1‑150 (MQ=255) tGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 2:3125616/1‑150 (MQ=255) tGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 1:4929245/1‑150 (MQ=255) tGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 2:833816/1‑150 (MQ=255) tGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 1:6310550/1‑150 (MQ=255) cAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTAGGAAACTCCCCCATCAAACTTTCCAg < 1:756694/150‑1 (MQ=255) | GGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGT‑CCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTCCAGC > NC_002947/5104888‑5105184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |