| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,105,037 | C→T | 5.1% | intergenic (+126/+27) | PP_4488 → / ← phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,105,037 | 0 | C | T | 5.1% | 623.3 / 14.3 | 195 | intergenic (+126/+27) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (96/89); new base T (8/2); total (104/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
Only 100 of 198 total aligned reads displayed.
GGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTCCAGCAC > NC_002947/5104888‑5105186 | gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCGCAGCCAGAGCACCGCGTATTACCTGTGGGAGCGGCCGTGTGTCGCGCAAGGACTGCAAc > 2:4488498/1‑150 (MQ=255) ctgctCCACCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTccc < 2:5361380/150‑1 (MQ=255) ctgctCCACCGGCTGATACCTGGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTccc < 2:348812/150‑1 (MQ=255) gctCCACCGGCTTATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTTTTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAg < 1:3855788/150‑1 (MQ=255) gctCCACCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCGTTGCAGTccttt < 2:143371/150‑4 (MQ=38) tCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCGATCGCGGCACAAGGCCCCGCCCCCCCGTAATTGGCGCAGCCCCAGCACACCGGGTTTCCTGTGGGGGCGGCCGTGTGTGGCGCAAGGGCTGGCACCCCGTCCCACGt > 2:1746571/1‑150 (MQ=255) aagggCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCTACACAAGGCGGATCCCAAAGTTAAGGCGCTCAGCCAGAGCACAGGGTTTTACCTGTGGGAGGGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt < 2:2307079/147‑1 (MQ=255) aCGGCTTATACCTTGGAAGGGGGGGCCCGGCGGGCCCCTATCGCCACACACGGCCGCTCCCACATATAATGCGCTCAGCCAGAGCACAGGGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCtt < 1:5500952/150‑1 (MQ=38) cGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACCGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt < 2:931477/150‑1 (MQ=255) cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACCCAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc < 2:499415/150‑1 (MQ=255) cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc < 2:6800893/150‑1 (MQ=255) cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc < 1:4456285/150‑1 (MQ=255) cTGATACCTTGGAAGCGGGGGCCCGGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATACTGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc < 2:4764088/150‑1 (MQ=255) tACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACTGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaac < 2:3577018/150‑1 (MQ=255) cTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCaacaac < 2:6317186/150‑1 (MQ=255) cTTGGAATCGGGGGCCCGGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATAATGCGCTCAGCCAGCGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCaacaac < 1:2191757/150‑1 (MQ=255) gggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATccgcc < 2:2235788/150‑1 (MQ=255) ggggCCCGCAGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGCGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATccgccg > 2:6588798/1‑150 (MQ=255) cccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATTCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACtt > 2:1683648/1‑150 (MQ=255) ggCCCCTATCGCGACACACGGCCGCTCCCACAGATACTGCGCTCAGCCTGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc < 2:4582208/150‑1 (MQ=255) ggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGTGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc < 1:5050264/150‑1 (MQ=255) ggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCACAGCCAGAGCACAGGGTTTTACCTGGGGTAGCGGCCTTGTGACGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc < 1:661665/150‑1 (MQ=255) ccccTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa < 2:5049286/150‑1 (MQ=255) ccccTAGCGCGCCCCCCGGCCGCTCCCACAGATAATGCGCTCACCCTTAGAACAGGTTTTTACCTGTGGGCGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa < 1:160858/150‑1 (MQ=255) aTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAt < 2:6758047/150‑1 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATc < 2:5096536/150‑1 (MQ=255) gcgACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATccc > 1:4467789/1‑150 (MQ=255) gACACAAGGCCGCTCCCACAGATAAGGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGGCCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTc < 2:1572842/150‑1 (MQ=255) acacAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCa > 1:2976661/1‑150 (MQ=255) aaGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGTACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACtt > 2:3695649/1‑150 (MQ=255) aaGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACtt > 2:2727527/1‑150 (MQ=255) gCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACCGCGTATTACCTGTGGGAGCGGCCTTGGGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt < 1:2662916/150‑1 (MQ=255) gCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACttgtt < 2:260990/150‑1 (MQ=255) cGCTCCCACAGATACTGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTgg < 2:5157981/150‑1 (MQ=255) cGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTgg > 2:6150678/1‑150 (MQ=255) tCCCACAGATAATGCGCTCCGCCAGAGCACTGCGTATTACGTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCaa < 1:4681563/150‑1 (MQ=255) tCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCaa > 2:10933/1‑150 (MQ=255) ccccACAGATATGGCGCACAGCCATAGAACAGGTTTTTACGTGTGGGAGCGGCCTTGTGCCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGCCTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCaa < 1:1746589/149‑1 (MQ=255) ccACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAAtt > 1:6172857/1‑150 (MQ=255) ccACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAAtt > 2:1101085/1‑150 (MQ=255) acaGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGt > 1:6269024/1‑150 (MQ=255) acaGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGt > 1:830992/1‑150 (MQ=255) aGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCg > 1:6011041/1‑150 (MQ=255) aGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCg > 1:6521323/1‑150 (MQ=255) aGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCg > 1:5873768/1‑150 (MQ=255) gATAATGCGCTCCGCCAGAGCACAGCGTTTTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgt < 1:4136972/150‑1 (MQ=255) tattGCGCTCCGCCCGAGCACTGCTTATTACCTGTGGGCGCGGCATTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgtgt < 1:1841787/147‑1 (MQ=255) tAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgtgt < 1:1071593/150‑1 (MQ=255) aaTGCGCTCCGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGGCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGtgtg < 1:699754/150‑1 (MQ=255) tGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCg > 2:3412426/1‑150 (MQ=255) tCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgt > 1:2606592/1‑140 (MQ=255) tCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCgt < 2:2606592/140‑1 (MQ=255) ccAGAGCACAGCTTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCa < 2:4907616/150‑1 (MQ=255) ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTaa > 1:1422836/1‑86 (MQ=255) ctgagCACAGCTTATTACCGGGGGGAGCGGCCTTGTGCCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg < 1:5732469/148‑1 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 1:6241402/1‑150 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 2:5505831/1‑150 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 1:3072224/1‑150 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 2:1894583/1‑150 (MQ=255) cAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTACAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg > 1:3129489/1‑150 (MQ=255) agagCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGt > 1:1958458/1‑150 (MQ=255) gCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtt < 1:2912765/150‑1 (MQ=255) cacaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCttt < 2:6857023/150‑1 (MQ=255) accgCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt < 1:4045896/147‑1 (MQ=255) acaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt < 2:1757757/150‑1 (MQ=255) acaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt < 1:2543133/150‑1 (MQ=255) aTTACCTGTGGGAGCGGCCTTGTGTCGCTAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAg < 2:2331392/150‑1 (MQ=255) ttACCTGTGGTCGCGGCATTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAgg < 1:2309921/150‑1 (MQ=255) ttACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAgg > 1:3079678/1‑150 (MQ=255) cTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCg > 2:1048256/1‑150 (MQ=255) tgtgGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGa > 2:4171558/1‑150 (MQ=255) tgGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGact > 2:5492342/1‑150 (MQ=255) ggAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGactac < 2:2976661/150‑1 (MQ=255) aGCGGCCTTGTGTCGCGAAAGGACAGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTg < 1:1036519/150‑1 (MQ=255) ggCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGa > 1:3932751/1‑150 (MQ=255) gCCTCGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGaa > 2:4660975/1‑150 (MQ=255) ccTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGaaa > 1:5691809/1‑150 (MQ=255) cTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAAc > 2:5148875/1‑150 (MQ=255) gtgtCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcc < 1:1682778/150‑1 (MQ=255) gtgtCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcc < 1:2324822/150‑1 (MQ=255) gtCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcccc > 2:1125510/1‑150 (MQ=255) cgAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATc > 2:5741310/1‑150 (MQ=255) cgAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATc < 1:2361915/150‑1 (MQ=255) cctgggACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCa > 1:5525501/5‑150 (MQ=255) ctgggACTGCGTTGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaa > 1:6501012/4‑150 (MQ=255) ctaGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaa > 2:522069/3‑150 (MQ=255) aaaGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTATTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaa > 1:1584192/1‑150 (MQ=255) tgggACTGCGTTGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGACACTCCCCCATCaaa > 2:3775077/3‑150 (MQ=255) tgggACTGCGTTGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaaa > 2:1418197/3‑150 (MQ=255) tgggACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGaaa > 1:3187154/3‑100 (MQ=255) aaGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaaa < 1:6422572/150‑1 (MQ=255) aaGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCaaa < 1:3695649/150‑1 (MQ=255) cTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTc > 2:3356529/1‑150 (MQ=255) cTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTc < 1:6303105/150‑1 (MQ=255) tGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 1:4929245/1‑150 (MQ=255) tGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 2:6007715/1‑150 (MQ=255) tGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 1:6310535/1‑150 (MQ=255) tGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 2:3125616/1‑150 (MQ=255) tGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTcc > 2:833816/1‑150 (MQ=255) aaCGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTCCAGc > 2:2928345/1‑150 (MQ=255) | GGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATCAAACTTTCCAGCAC > NC_002947/5104888‑5105186 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |