| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,130,096 | C→A | 5.7% | intergenic (+73/‑109) | PP_4511 → / → PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,130,096 | 0 | C | A | 5.7% | 641.1 / 5.3 | 205 | intergenic (+73/‑109) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| Reads supporting (aligned to +/- strand): ref base C (89/98); new base A (14/4); total (103/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.40e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 217 total aligned reads displayed.
GTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGC > NC_002947/5129947‑5130245 | tGCCTTTTCAGCGGCGATGCTGCGGGCGTGCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTGTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACC > 2:3953356‑M1/1‑150 (MQ=255) cTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGC < 2:6868320‑M1/150‑1 (MQ=255) cTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGC < 2:3406579‑M1/150‑1 (MQ=255) ttttCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCT < 1:2816043‑M1/150‑1 (MQ=255) ttttCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACCGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCCCT > 2:3051448‑M1/1‑150 (MQ=255) tttCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTC < 1:3213139‑M1/150‑1 (MQ=255) ttCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTTACCCGCgaa < 1:5510534‑M1/150‑4 (MQ=255) aGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTAC < 2:5173290‑M1/150‑1 (MQ=255) gcggcgATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACA < 1:2272566‑M1/150‑1 (MQ=255) gcggcgATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCTCCaaaa > 2:953109‑M1/1‑146 (MQ=255) ggcgATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG < 2:1342362‑M1/150‑1 (MQ=255) cgATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGAt < 1:6703646/150‑1 (MQ=255) gctgcGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGGAAAACCCCGCCCACAGGagggcc > 1:6363232/1‑145 (MQ=255) cGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGc < 2:173209/150‑1 (MQ=255) gTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGaa < 2:4551503/150‑1 (MQ=255) gTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGaa < 2:4974202/150‑1 (MQ=255) ttCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAt < 1:5895678/150‑1 (MQ=255) ttCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAt < 1:4776541/150‑1 (MQ=255) ggTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttg < 2:3256580/150‑1 (MQ=255) ggTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttg < 1:2953566/150‑1 (MQ=255) gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAttttgt < 2:2502912/150‑1 (MQ=255) gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttgt < 1:1910714/150‑1 (MQ=255) gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttgt < 1:5131936/150‑1 (MQ=255) tgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTtgtg < 1:3689396/150‑1 (MQ=255) aggccgaagaacagcgcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCaaa > 1:565174‑M1/89‑150 (MQ=255) ccTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAc > 1:979347‑M2/1‑149 (MQ=255) tttGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcct > 1:3803373‑M2/1‑147 (MQ=255) tttGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcct > 2:4311254‑M2/1‑147 (MQ=255) ttGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctg < 2:1687626‑M1/150‑32 (MQ=255) tGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgt < 1:1039175‑M1/150‑33 (MQ=255) aagaacagcgcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGt > 1:500317‑M1/83‑150 (MQ=255) ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgta < 1:6864935‑M1/150‑34 (MQ=255) ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgta > 1:1746222‑M2/1‑144 (MQ=255) ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgta > 2:6066238‑M2/1‑144 (MQ=255) ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgta > 2:6004864‑M2/1‑144 (MQ=255) agaacagcgcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTa > 1:3193402‑M1/82‑150 (MQ=255) agaacagcgcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCC‑TTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAg > 1:1259043‑M1/82‑150 (MQ=255) gCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtag > 1:3601776‑M2/1‑143 (MQ=255) gCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtag > 1:6267727‑M2/1‑143 (MQ=255) tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCGACTACAGGATGCCCCCCCCGGAATGTTTTGCAAAAccggtatga < 2:3059849‑M2/150‑10 (MQ=255) tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCACCTAAAGGATGCCCCCGCCTGAAAGTTGTGCAAAAcctgtaggg < 2:5350451‑M2/150‑10 (MQ=255) acagcgcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGa > 1:4002668‑M1/79‑150 (MQ=255) ttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggag < 1:6234564‑M1/150‑38 (MQ=255) tGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagc > 1:5689687‑M2/1‑139 (MQ=255) tGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagc > 2:2807286‑M2/1‑139 (MQ=255) cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGATTGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgg > 1:5354585‑M2/1‑137 (MQ=255) cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgg < 1:6627798‑M1/150‑41 (MQ=255) cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgg > 1:5222441‑M2/1‑137 (MQ=255) cgcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCgg > 2:5727756‑M1/75‑150 (MQ=255) ggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcggg < 1:1193026‑M1/150‑42 (MQ=255) ggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcggg > 1:2277675‑M2/1‑136 (MQ=255) gcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCggg > 2:4733038‑M1/74‑150 (MQ=255) gcgccaatgtgcagtgcgccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCggg > 2:6131103‑M1/74‑150 (MQ=255) tCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccg > 2:2642967‑M2/1‑128 (MQ=255) ggCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtaaacccgctc > 1:444252‑M2/1‑125 (MQ=255) gCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaa > 2:4589421‑M2/1‑124 (MQ=255) gATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCGCCTACAGGATGCCCCCCCCGGAATGGTGTGCAAAAcctggaggagcgggtttacccgcgacag < 2:5192751‑M2/150‑29 (MQ=255) tAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtaaacccgctcctaca > 1:1075826‑M2/1‑120 (MQ=255) tAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtaaacccgctcctaca > 1:4520704‑M2/1‑120 (MQ=255) aaCTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCTCCGACACGCTGCCCCCGCCCGGATGTTGTGCCAAACCGGTAGGAGCGGG‑TTTACCCGCGAAACGGc > 2:1271944/1‑150 (MQ=255) cTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGT‑TTTACCCGCGAAAGGGCCg < 2:3466856/150‑1 (MQ=255) tGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTAACACCCACCAAAAAGATTCCCCCCCCGGTCAGTTGGGGAAAACCGGGAGGCTCGGGTTTTACCCGGGAAAGGCCCg > 1:5473089/1‑150 (MQ=255) tGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCGCCGAAAGGGAGCCCCCGCCGGATTGTTTTGCAAAACCGGGAGGAGCGGG‑TTTAACCGCGAAATTGCCgg > 1:2182149/1‑150 (MQ=255) ccgTCTTGCCACTTATTGTTTTTGCCTGTGGCTTTAAAGTTTGCTTTGGCCGGCCCCTCCGGGGGTAAACCCGCCCCTCCGGTAGGCCCCCGCCTGAATGTTGTGAAAAACGTGTCGGCGCGGT‑TTAACCCGCGAAAGGGCCGGCACTGc < 2:19476/148‑1 (MQ=255) gTCTTGCGACCGATGGGGTTTGCCTGAGGCTTTACACTTTGCCTTGGCGGGCCCCTGGGGGGGGAACCCCGCGCCGCCCGGAGGCCCCCGCCTGATTGTTGGGCAAACCGTGTCGGAGGGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCt < 2:6622987/150‑1 (MQ=255) tCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTAAACCCCACCGACAGGCTGCCCCCCCCGGAATGGTGTGCAAAACCGGGAGGTGCCGG‑GTTACCCGCGCAACGGCcggcccggccgg > 1:3852014/1‑148 (MQ=255) ttGCGACCGAATGTGTTGGCCTGCGGATTTACACTTGGCCTTTGCCGGCCCCTTCGCGGGTAACCCCGCTCCACCCGGATGCCCCCCCCTGAAGGTGGGGCAAAACCTGTAGGCGGGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTa < 2:4004269/150‑1 (MQ=37) ttGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAATCACGCGCCTACAGGATGCCCCCGCCTGAATTTTTTGCAAAAACTGTAGGAGCGGG‑TTTAACCCAGAAAGGGCCGGCCCTGCCTGTa > 2:2122488/1‑150 (MQ=255) ttGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCCCGCCAACAGGAAGCCCCCCCCGGAATGTTGTGCAAAAACGGGAGGAGCGGG‑TTTAACCCCGAAAGGGCCGGCACAGCCTGTa > 2:2903837/1‑150 (MQ=255) ttGCCACACAATGTCTTTCCCTCAGGATTTACACTTTGCCTTTGCCGCCCCCTACCCTGGTAAACCCGCACCAACAGCATCCCCCCCAATCAATGTTTTCAAAAACCCGTAGGAGCGGT‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTa < 2:4678543/150‑1 (MQ=255) cGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCGTTTGCCGGCCCCTTCGCGGGTAAACCCGCGCCGACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTagag < 2:3738670/150‑1 (MQ=255) cGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTTTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTagag < 2:3614199/150‑1 (MQ=255) gACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCACCTACAGGATGCCCCCCCCGGAATGTTGTGCAAAAACTGTAGGAGCGGG‑GTTAACCGCGAAAGGGCCGGCACGGCCGGTAgaga > 2:6440530/1‑150 (MQ=255) actcattgttTTTGCCTGTGGCTTTACACTTTGCCTTTGCGGGCCCCTGCGCGGTTAACCCCGCCCCTACCGGTTGCCCCCCCCTGATTGTTGTGAAAAACCTGTAGGAGCGGT‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGAt < 2:1163914/144‑1 (MQ=37) caTGTGTTTGCCTGTGGCTTTACACTTTGCCTTGGCCGGCCCCTGCGCGGGTAAACCCGCTCCTACCGGATGCCCCCGCCTGACTGTTGGGCAAAACCTGTCGGCGCGGG‑TTTCCCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTcc < 2:1826526/149‑1 (MQ=255) aaTGTGTTTGCCTGAGGCTTTACCCTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTTAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTcc < 2:1468221/150‑1 (MQ=255) aaTGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCGCCTACAGGCTGCCCCCCCCGGAAAGTTTTGCCAAACCGGTAGGGGCGGG‑TTTACCCCCGAAAGGGCCGGCACAGCCGGTAGatataaac > 2:2348477/1‑146 (MQ=255) gtTTGCCTGTGGCTTTACACTTTGCCTTGGCCGGCCCCTGCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGGTGTGCAAAACCTGTAGGAGCGGT‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCaa < 2:6357795/150‑1 (MQ=38) tGCCTGAGTCTTTACACTTTGCCTTGGCCGGCCCCTTCGCGGTTAAACCCGCTCCTACAGGATGCCCCCGCATTAATGTTGTGCAAAACCTGTCGGAGCGGT‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGa < 2:943100/150‑1 (MQ=38) ggCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTGCGGGGGTAAACCCGCTCCTCCCGGATGCCCCCGCCTGATTGTTGTGCAAAACCTGTTGGAGGGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGa < 2:6307197/149‑1 (MQ=38) ccTGAGGCTTTCCACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGAAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGAcc < 2:6361815/150‑1 (MQ=255) tttACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCGGAATGTTGTGCAAAACCGGTAGGCGCGGG‑TTTACCCGCGAAAGGGCCGGCACAGCCTGTAGAGATCTCCATCAAGGACCCACCATGa > 2:2652693/1‑150 (MQ=255) tttgccGGCCCCTTCGCGGGTAAACCCGCTCCTACAGTATGCCCCCGCCTTATTTTGGTGAAAAACCTGTCGCTGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCaccgcaccgc < 1:2764176/150‑1 (MQ=38) tttgccGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCCCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCGGTAGAGATCACCAACAAGGACCCACCAAGAACCaccgcaccgc > 2:1606314/1‑150 (MQ=38) ggccgccCCCTTCGGGGTTAACCCCGCACCTCCCGGCCCCCCCCGCCTTCTTTTTCTCCAACCCCTGGTGGCGGGGT‑TTAACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGccc < 1:6319971/149‑1 (MQ=255) CGGCCCCTTCGCGGGTAAACCCGCCCCTCCAGGATCCCCCCGCCTGAATGTTGTGCAAAACGTGTCGGAGGGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCg > 1:1556474‑M1/1‑150 (MQ=255) cgcgGTTAAACCCGCTCCTACAGTATCCCCCCGCCTTATTGTTGTCCAAAACCTTTAGGAGGGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGc < 1:4350186/150‑1 (MQ=255) cgcgGTAAACCCCGCTCCCCACGGttttccaaaacattcaggggggggcatcctgtcggagggggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgcca < 2:1897770‑M1/150‑127 (MQ=255) cgcgGGTAAACCCGCTCCTACAGTttttgcacaacattcaggggggggcatcctgttggcgcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgcca < 2:1550801‑M1/150‑127 (MQ=255) cgGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccaga > 1:6613446‑M1/1‑22 (MQ=255) ggttaaaCCCGCTCCTACAGGtttcgcacaaaattctggcgggggcatcctttaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagac < 2:2795987‑M1/147‑130 (MQ=255) gTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcgggcaaacacattctgtcgcaagactgctgtcagttatcgccagactc > 1:1730836‑M1/1‑19 (MQ=255) gTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAtt > 1:4660810/1‑150 (MQ=255) aCCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgc > 1:3139531‑M1/1‑15 (MQ=255) aCCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagggtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgc < 2:535416‑M2/150‑109 (MQ=255) aCCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcg > 1:1292365/1‑150 (MQ=255) cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgcc < 1:5865044‑M2/150‑110 (MQ=255) cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc > 1:3780940/1‑150 (MQ=255) cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc > 1:4640678/1‑150 (MQ=255) cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc > 2:4174345/1‑150 (MQ=255) | GTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGG‑TTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGC > NC_002947/5129947‑5130245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |