Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,477,154 T→A 7.6% K95* (AAG→TAG) ‡ rlmH ← 23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,477,1540TA 7.6% 993.5 / 47.0 306K95* (AAG→TAG) ‡rlmH23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
Reads supporting (aligned to +/- strand):  ref base T (122/158);  new base A (8/15);  total (130/176)
Fisher's exact test for biased strand distribution p-value = 5.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 313 total aligned reads displayed.

TCAGCGGCGACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAGCTCGGCGG  >  NC_002947/5477007‑5477303
                                                                                                                                                   |                                                                                                                                                     
tccgcggcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGc                                                                                                                                                     <  1:464180/147‑1 (MQ=255)
tCAGCGGCGACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAAGTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGc                                                                                                                                                     <  2:5049396/150‑1 (MQ=255)
  aGCGGCGACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCa                                                                                                                                                   <  1:4190713/150‑1 (MQ=255)
     ggcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCAAGCCATGGa                                                                                                                                               <  2:5953450/150‑1 (MQ=255)
     ggcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCAAGCCATGGa                                                                                                                                               <  2:3351745/150‑1 (MQ=255)
      gcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGa                                                                                                                                               <  1:5656979/150‑1 (MQ=255)
      gcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCAAGCCATGGa                                                                                                                                               <  1:6836014/150‑1 (MQ=255)
      gcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCAAGCCATGGa                                                                                                                                               <  2:262067/150‑1 (MQ=255)
      gcgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCAAGCCATGGa                                                                                                                                               <  1:2348083/150‑1 (MQ=255)
       cgACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGAc                                                                                                                                              <  1:5030697/150‑1 (MQ=255)
          cAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTc                                                                                                                                           >  1:5093793/1‑150 (MQ=255)
           aGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCg                                                                                                                                          >  2:5060043/1‑150 (MQ=255)
             cGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAg                                                                                                                                        <  1:1596105/150‑1 (MQ=255)
             cGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAg                                                                                                                                        <  2:674580/150‑1 (MQ=255)
              gACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCCAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAgg                                                                                                                                       <  2:3635968/150‑1 (MQ=255)
              gACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAgg                                                                                                                                       <  2:4938875/150‑1 (MQ=255)
                 cAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTg                                                                                                                                    <  2:5845440/150‑1 (MQ=255)
                  aaCGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGa                                                                                                                                   <  1:2882262/150‑1 (MQ=255)
                  aaCGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGa                                                                                                                                   >  2:2499956/1‑150 (MQ=255)
                   aCGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGACAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGAc                                                                                                                                  >  2:5479166/1‑150 (MQ=255)
                     gTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACaa                                                                                                                                >  2:4145206/1‑150 (MQ=255)
                      ttGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAAt                                                                                                                               <  1:921218/150‑1 (MQ=255)
                         cTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCg                                                                                                                            <  1:222613/150‑1 (MQ=255)
                         cTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCg                                                                                                                            <  2:6683140/150‑1 (MQ=255)
                          tCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGt                                                                                                                           >  2:3730778/1‑150 (MQ=255)
                          tCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGt                                                                                                                           <  1:4207920/150‑1 (MQ=255)
                             gcgcgcgcgcAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTcc                                                                                                                        <  1:4324162/150‑1 (MQ=255)
                             gcgcgcgcgcAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTcc                                                                                                                        >  1:6641827/1‑150 (MQ=255)
                              cgcgcgcgcAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTccc                                                                                                                       <  1:1432297/150‑1 (MQ=255)
                                cgcgcgcAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCa                                                                                                                     <  1:6290511/150‑1 (MQ=255)
                                 gcgcgcAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACCATGCGTTCCCCAg                                                                                                                    >  2:5707105/1‑150 (MQ=255)
                                     gcAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTg                                                                                                                >  2:5619680/1‑150 (MQ=255)
                                        aaCCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCAc                                                                                                             <  2:6386968/150‑1 (MQ=255)
                                           cTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACttt                                                                                                          >  1:5382968/1‑150 (MQ=255)
                                            tCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTg                                                                                                         <  1:4948326/150‑1 (MQ=255)
                                              aGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCt                                                                                                       <  2:3071429/150‑1 (MQ=255)
                                                gcgcCCGGCCCTCCGGGCCGCCCACCAGCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGTGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCa                                                                                                     <  1:5167904/150‑1 (MQ=255)
                                                gcgcCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCa                                                                                                     <  1:1168602/150‑1 (MQ=255)
                                                gcgcCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGCCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCa                                                                                                     >  1:1878992/1‑150 (MQ=255)
                                                 cgcCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAg                                                                                                    <  1:3457864/150‑1 (MQ=255)
                                                  gcCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGc                                                                                                   >  2:3502317/1‑150 (MQ=255)
                                                  gcCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGc                                                                                                   >  1:6319248/1‑150 (MQ=255)
                                                     aGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATg                                                                                                <  2:6121899/150‑1 (MQ=255)
                                                     aGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATg                                                                                                >  2:1524260/1‑150 (MQ=255)
                                                          cTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTc                                                                                           >  2:2029986/1‑150 (MQ=255)
                                                          cTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTc                                                                                           >  1:3776732/1‑150 (MQ=255)
                                                             cGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGcc                                                                                        >  2:4443655/1‑150 (MQ=255)
                                                              gggCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGccc                                                                                       <  2:2698352/150‑1 (MQ=255)
                                                                    cccACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGa                                                                                 >  1:3163762/1‑150 (MQ=255)
                                                                     ccaccaTCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGAc                                                                                >  1:1970679/1‑150 (MQ=255)
                                                                     ccaccaTCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGAc                                                                                >  2:4802059/1‑150 (MQ=255)
                                                                        ccaTCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGa                                                                             <  2:793387/150‑1 (MQ=255)
                                                                         caTCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGAt                                                                            >  2:6603337/1‑150 (MQ=255)
                                                                          ctCAAATTCCCCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCGCCTGatccgtc                                                                           <  2:5737581/149‑7 (MQ=255)
                                                                           tCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCATCTCGGTCGCCAGCTTCTCGGTACTCCATTGCTTGCCATGGACCTCGAGTGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCa                                                                          <  1:4834284/150‑1 (MQ=255)
                                                                           tCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCa                                                                          >  2:2655104/1‑150 (MQ=255)
                                                                              aaTTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAggc                                                                       >  1:1617535/1‑150 (MQ=255)
                                                                               aTTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAggcg                                                                      <  1:4292767/150‑1 (MQ=255)
                                                                                  cACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAggcgggc                                                                   <  1:5294573/150‑1 (MQ=255)
                                                                                   aCCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACt                                                                                                            <  2:6308489/108‑1 (MQ=255)
                                                                                   aCCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAggcgggcg                                                                  >  1:6798502/1‑150 (MQ=255)
                                                                                     cGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGAc                                                                <  2:2151564/150‑1 (MQ=255)
                                                                                     cGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGAc                                                                <  1:31290/150‑1 (MQ=255)
                                                                                     cGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCGCCTGATCCGTCAGGAGGGCGaa                                                                <  1:200652/150‑2 (MQ=255)
                                                                                     cGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCGCCTGATCCGTCAGGAGGGCGaa                                                                <  2:5137697/150‑2 (MQ=255)
                                                                                           cgcATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGc                                                          <  2:2366275/150‑1 (MQ=255)
                                                                                              aTCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCAtt                                                       >  2:4290227/1‑150 (MQ=255)
                                                                                               tCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTc                                                      <  1:5628061/150‑1 (MQ=255)
                                                                                                 cAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCtt                                                    <  2:2333338/150‑1 (MQ=255)
                                                                                                 cAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCtt                                                    <  1:6206068/150‑1 (MQ=255)
                                                                                                 cAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCtt                                                    <  1:3686993/150‑1 (MQ=255)
                                                                                                 cAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCGGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCtt                                                    <  1:3392844/150‑1 (MQ=255)
                                                                                                   ggCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACACTGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGc                                                  <  1:5780407/150‑1 (MQ=255)
                                                                                                      gcCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCAc                                               <  1:2608040/150‑1 (MQ=255)
                                                                                                        cAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACgg                                             <  2:1263714/150‑1 (MQ=255)
                                                                                                        cAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACgg                                             <  2:4709009/150‑1 (MQ=255)
                                                                                                         aGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACggg                                            <  1:4891325/150‑1 (MQ=255)
                                                                                                         aGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTAAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACggg                                            >  1:1058854/1‑150 (MQ=255)
                                                                                                           cGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTa                                          <  1:6096228/150‑1 (MQ=255)
                                                                                                               ccAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCa                                      <  1:1299848/150‑1 (MQ=255)
                                                                                                                cAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAg                                     >  2:1828277/1‑150 (MQ=255)
                                                                                                                  gCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCg                                   <  2:2978758/150‑1 (MQ=255)
                                                                                                                   cTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCgg                                  <  1:6508884/150‑1 (MQ=255)
                                                                                                                   cTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCgg                                  <  2:3959530/150‑1 (MQ=255)
                                                                                                                       gTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGAtt                              >  1:2268155/1‑150 (MQ=255)
                                                                                                                       gTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGAtt                              <  1:5447964/150‑1 (MQ=255)
                                                                                                                        tCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGAttt                             >  1:2100773/1‑150 (MQ=255)
                                                                                                                         cGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGAGGGATTTc                            <  2:5375490/150‑1 (MQ=255)
                                                                                                                          gCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTcc                           >  1:3269527/1‑150 (MQ=255)
                                                                                                                                    tcgaggtCCATGGCAAGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCa                 >  1:2750949/7‑150 (MQ=255)
                                                                                                                                     ggTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAg                <  1:3918113/150‑1 (MQ=255)
                                                                                                                                      gTACTCCATGGCTGGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGc               <  2:4596304/150‑1 (MQ=255)
                                                                                                                                          tCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACa           <  1:6656787/150‑1 (MQ=255)
                                                                                                                                          tCCATGGCAAGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTCTTCAGCGGGATTTCCACCAGCTCCAGCGACa           >  1:5899236/1‑150 (MQ=255)
                                                                                                                                          accATGGCAAGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACa           >  1:5913790/2‑150 (MQ=255)
                                                                                                                                           ccATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAg          <  2:1204279/150‑1 (MQ=255)
                                                                                                                                           ccATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAg          <  1:1150548/150‑1 (MQ=255)
                                                                                                                                            cATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAGc         >  2:775557/1‑150 (MQ=255)
                                                                                                                                               ggCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAGCTcg      >  1:2458345/1‑150 (MQ=255)
                                                                                                                                                gCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAGCTcgg     >  1:1703116/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
TCAGCGGCGACAGCGACCAACGTTGCTCGGCGCGCGCGCAAACCTCAGGCGCCAGGCCCTCCGGGCCGCCCACCATCAAATTCACCGTGCGCGCATCCAGGCGCCAGCGGTCCAGCTCGGTCGCCAGCTGCTCGGTACTCCATGGCTTGCCATGGACCTCGAGGGTGACAATGCGTTCCCCAGGCTGCACTTTGCTCAGCATGGCTTCGCCCTCCTGACGGATCAGGCGGGCGACGTCGGCATTCTTGCCACGGGTATTCAGCGGGATTTCCACCAGCTCCAGCGACAGCTCGGCGG  >  NC_002947/5477007‑5477303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: