| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,557,910 | T→G | 11.0% | intergenic (+576/+85) | PP_4882 → / ← PP_5717 | iron ABC transporter permease/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,557,910 | 0 | T | G | 11.0% | 677.3 / 25.0 | 255 | intergenic (+576/+85) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (71/146); new base G (32/3); total (106/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 263 total aligned reads displayed.
TTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAG > NC_002947/5557761‑5558059 | ttCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCt > 2:3115934/1‑150 (MQ=255) cGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTc < 2:698567/150‑1 (MQ=255) cGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTc < 1:6212156/150‑1 (MQ=255) cGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTc < 2:5886720/150‑1 (MQ=255) cTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCGTCGCaaa > 1:408270/1‑150 (MQ=255) cTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCGTAGCaaa > 1:407863/1‑150 (MQ=255) tCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAg > 2:5366959/1‑150 (MQ=255) tCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCGTATGCTGAACAAGGTCGTGCGGAAGTCCGAACCAGAAGCCCAGACCGGCAGGTCCGGGCGGTGCGTCGCCAAg > 2:241747/1‑150 (MQ=255) cATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCACGAAGCAGGCTTATGCTGAACACGGTCTTGAGGAATTCCGAACCAGACGCCAAGACCGGCAGGTCCGGGCTTTGCGTCGCAAAGc < 1:4623912/150‑1 (MQ=255) aTTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTc < 1:6483678/142‑1 (MQ=255) aTTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGcc < 2:1959650/150‑1 (MQ=255) ttttCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGccc < 2:6338270/150‑1 (MQ=255) tttCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCg < 1:4006757/150‑1 (MQ=255) ctctCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑Tg < 2:1574110/150‑1 (MQ=255) tctcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGGGTTTCTTGGCAAAACCCCGaaaaagg > 1:1774308/1‑146 (MQ=17) tctcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑Tgg < 1:5735316/150‑1 (MQ=255) tctcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑Agg > 2:6629188/1‑150 (MQ=255) ctcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑Tggg < 2:2210346/150‑1 (MQ=255) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTGTTAGCAAAACCCCGAAAA‑Agggg > 1:5252103/1‑150 (MQ=17) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑Tgggg > 2:5123549/1‑150 (MQ=255) tAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTGCGTCGCCAAGCCCCGAACC‑GGGGGgtt > 2:293041/1‑150 (MQ=17) aGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTTCATAGCAAAGACCGGAAACGTGGGGttaa > 1:6107245/1‑148 (MQ=17) cACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTAGCAAAGCCCGGAAAC‑TGGGGTTTCAGCt > 2:3664567/1‑150 (MQ=255) aCTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGGGTTTCGTAGCAAAACCCCCAAAC‑AGGGGGTTAAGcgg > 1:757539/1‑148 (MQ=17) cTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCtgg < 1:4274191/150‑1 (MQ=255) tGCGCATCAGTTGGTACGTCTGGTGTACCGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACCAGGTCTGGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCtggt < 1:6443776/150‑1 (MQ=255) tGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTAGCAAAGCCCGGAAAC‑TGGGGTTTAAGCtggt > 2:3750935/1‑150 (MQ=255) cgcATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCtggtgg > 2:5568231/1‑150 (MQ=255) gcATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCtggtgcc > 2:6089205/1‑148 (MQ=255) aGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCGGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCtt < 2:5239817/150‑1 (MQ=255) aGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAACCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCtt < 1:1138993/150‑1 (MQ=255) ggTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAgt < 1:3798404/150‑1 (MQ=255) ggTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAgt < 1:4342367/150‑1 (MQ=255) aCGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGtt < 1:5993277/150‑1 (MQ=255) aCGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTAGGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGtt < 1:5188460/150‑1 (MQ=255) gTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGACCCAGAAGCCAAGCCCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTa < 2:6083586/150‑1 (MQ=255) gTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTCTTGGCAAAGCCCGGAAAC‑TGGGGGTTCAGCTGGTGGCTGCTTGAGTGtttt > 1:4489001/1‑149 (MQ=255) gTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTCTTAGCAAAGCCCGGAAAC‑GGGGGTTTCAGCTGGTGGCTGGTTGAGTGTTTa > 2:1922595/1‑150 (MQ=255) tCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑AGGGGGTTCAGCTGGTGGCTGCGTGAGTGTTTAg > 2:4660899/1‑150 (MQ=255) cTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGa < 1:3084810/150‑1 (MQ=255) gtgtACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTGCTTCGCAAAGCCCCGAAAC‑AGGGGTTTCAGCGGGGGGCGGCGTGAGTGTTTAGaaaa > 1:4970053/1‑150 (MQ=17) cAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATg < 2:6819967/150‑1 (MQ=255) aGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCGAAGCAAAGccc > 2:3717824/1‑100 (MQ=255) ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGt > 2:3883935/1‑150 (MQ=255) ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTTCGTAGCAAAGCCCCGCAAC‑GGGGGTTTAAGCTGGTGGGGGCGTGATTGTTTTGAaaaaaaatggt > 2:2268943/1‑145 (MQ=17) ttCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCa < 1:216848/150‑1 (MQ=255) aCCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTAAGCGGGTGGCTGCTTGAGTGTTTAGAAAACAAAGGGGTGCATTc > 2:3267479/1‑150 (MQ=255) cAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTg < 1:1363618/150‑1 (MQ=255) aagaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTGCTTCGCAAATCCCGGAAAC‑AGGGGTTTAAGCTGGTGGCTGCGTGAGTGTTTAGAAAAAAAAGGGTTGCAATATGt > 1:5598778/1‑150 (MQ=17) agaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGtt < 2:4431492/150‑1 (MQ=255) gaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGttt < 1:165875/150‑1 (MQ=255) agCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGa < 2:93511/150‑1 (MQ=255) agCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTGCGTCGCAAAGCCCCGAAAC‑AGGGGTTTCAGCTGGTGGCGGCGTGAGTGTTTTGAAAACAATGGGTTTCATTATGTTTgt > 1:6790082/1‑149 (MQ=14) gCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCGTCGCAAAGCCCGGCAAC‑AGGGGTTTCAGCTGGGGGCTGCGTGAGTGTTTAGAAAACAAGGGGGTGCAGTCTGTTTGACCacg > 2:3462910/1‑148 (MQ=17) cTTTTGCTTAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCTAGACCGGCAGGTCCTGGATTTGCTTCGCATAGCCCGGAAAC‑TGTGGTTTCATCTGTTGGATGCTTTAGTTTTTAGAATAAAATGGGTTTCATTCTGTTTTACCAgtt < 2:3512238/150‑3 (MQ=255) tGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTa < 2:1768899/150‑1 (MQ=255) tGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTa > 2:5052192/1‑150 (MQ=255) gAACAAGGTCTTGAGGAAGTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTc < 1:1868323/150‑1 (MQ=255) aaCAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCGTCGCCAAGCCCCGAAAC‑TGGGGGTTCAGCTGGGGGCGGCTTGAGTGTTTAGAAAACAAAGGGGTGCATTCTGGTTGACCAGGGCTTACcaca > 2:3609431/1‑150 (MQ=17) aaCAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCGTAGCAAAGCCCCGCAAA‑AGGGGTTTAAGCTGGTGGGGGCTTGAGTGTTTTTAAAAAAAATGGTTGCATTATGTTTGAACAGGGCTTAccgac > 1:1054706/1‑147 (MQ=17) aaCAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTTCTTAGCAAACCCCCGAAAA‑AGGGGTTTAAGCGGGGGGCGGGGTGAGTGTTTATAAAACCAATGGTTGCATTAAGTTTGACCAGGGCCTACCCCa > 2:596789/1‑150 (MQ=12) aCAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCaa < 1:3195129/150‑1 (MQ=255) aCAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCaa < 2:5820505/150‑1 (MQ=255) aGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGAATAGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCAATATGTTTGACCAGGGCTTTCCTCAAGTa > 2:5453766/1‑150 (MQ=18) gTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTAct < 2:4107908/150‑1 (MQ=255) tCTTGAGTAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTActc < 1:231872/150‑1 (MQ=255) cTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTActct < 2:2026841/150‑1 (MQ=255) ttGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCCAAGCCCCGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGGTTTGAAAACAATGGGTTGCATTATGTTTGACCCGGGCTTGCCTCAAGTACTCTa > 2:4211934/1‑150 (MQ=18) ttGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCGTTGCGTCGCAAAGCCCCGAAAC‑AGGGGTTTCAGCTGGTGGCGGCGTGAGTGTTTAGAAAACAAAGGGTTGCATTCTGTTTGGCCAGGGCGTACCGCAAGTActcga > 2:2662434/1‑148 (MQ=18) aGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTTCTTCGCAAAGCCCGGAAAC‑GGGGGTTTAAGCTGGTGGCTGGGTGAGTGTTTTTAAAAAAAAGGGTTGCATTCTGTTTGAACAGGGCTTACCTCAAGTAATCTATcc > 1:3985597/1‑150 (MQ=18) aGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATcc < 2:1169146/150‑1 (MQ=255) tCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCAGGTTGCTGCTTGATTGTTTATAAAAAAATGGGTTGCATTCTGTTTGACCAGGGCTTAACAAAAGTACTCTATACAAATaa > 2:4800444/1‑150 (MQ=18) ccAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGATAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGaaaaaaaa < 1:5366959/150‑1 (MQ=255) ccAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGaaaaaaaa < 2:1683675/150‑1 (MQ=255) cAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAg < 2:4014720/150‑1 (MQ=255) gAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGaa < 2:6431595/150‑1 (MQ=255) ccAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAt < 2:4872110/150‑1 (MQ=255) ccAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAt < 1:5447707/150‑1 (MQ=255) cAAGACCGGCAGGTCCGGGCGTTGCGTCGCAAAGCCCGGAAAC‑GGGGGGTTCAGCTGGTGGCTGCTTGAGTGGTTAGAAAACAATGGGTTGCATTCTGTTTGGCCAGGGCGTACCGCAAGTACTCTATACAAAGAAAAAAAAGAACaaac > 2:1506543/1‑148 (MQ=21) gACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGt < 2:6170415/150‑1 (MQ=255) ggCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCaa < 2:2281724/150‑1 (MQ=255) gCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAAt < 2:2017597/150‑1 (MQ=255) aGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCa < 1:3660360/150‑1 (MQ=255) aGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCa < 2:5270219/150‑1 (MQ=255) aGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCa < 2:1297951/150‑1 (MQ=255) cGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaa > 2:2989534/1‑150 (MQ=255) cGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaa > 2:6231167/1‑150 (MQ=255) cGGGCTTTGCGAAGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaa > 2:4741356/1‑150 (MQ=255) cGGGCTTTGCGAAGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaa > 1:1430550/1‑150 (MQ=255) gggCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaaa < 1:2882189/150‑1 (MQ=255) gggCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaaa < 1:3870166/150‑1 (MQ=255) gggCTTTGCGAAGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCaaaa > 1:3460442/1‑150 (MQ=255) gCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAAtt > 1:371672/1‑150 (MQ=255) cTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAAttt < 2:2464175/150‑1 (MQ=255) tttGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTg < 2:4096462/150‑1 (MQ=255) ttGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGt < 1:625483/150‑1 (MQ=255) tGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTa < 2:6107525/150‑1 (MQ=255) gCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTAc < 1:2024601/150‑1 (MQ=255) ttCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAg > 1:6813331/1‑150 (MQ=255) ttCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAg > 1:973588/1‑150 (MQ=255) | TTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAAC‑TGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAG > NC_002947/5557761‑5558059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |