| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,560,602 | A→T | 5.3% | intergenic (‑81/+93) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,560,602 | 0 | A | T | 5.3% | 630.3 / 19.3 | 222 | intergenic (‑81/+93) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Reads supporting (aligned to +/- strand): ref base A (85/116); new base T (5/7); total (90/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-02 | |||||||||||
Only 100 of 223 total aligned reads displayed.
CCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5560453‑5560749 | ccGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATa < 1:3057795/150‑1 (MQ=255) cGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑g < 1:6459111/150‑1 (MQ=255) cGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑g > 2:5129665/1‑150 (MQ=255) tACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCg < 1:5895954/150‑1 (MQ=255) cGCTGTCACTGTTCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑c < 2:4774784/150‑1 (MQ=255) gCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑TCGG‑cc > 2:356424/1‑150 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑cccc < 1:1976135/150‑1 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCgg < 1:6235240/150‑1 (MQ=255) cACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCTAT‑GCGG‑ccctttc < 2:5170932/150‑5 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGTGGCG‑AAATGGGCGCATA‑GCGG‑CCCCGGcc > 2:1384808/1‑149 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTCGCG‑GAAGGGCCGCCTA‑GCCG‑CGCCGGCAAGTTAcg > 1:3316151/1‑150 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCatcaacat > 1:5508244/1‑143 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCcg < 2:4383154/150‑1 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCG‑GAAAGGCCGCAGA‑GCCG‑CCCCCGCACATTcccc > 1:450360/1‑148 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCACATTCcgc > 2:1072862/1‑150 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCcgc < 1:5113695/150‑1 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCgt < 2:6728863/150‑1 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCgt < 1:3398836/150‑1 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTa < 2:1629661/150‑1 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTa < 2:1476142/150‑1 (MQ=255) aGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGc < 1:4619962/150‑1 (MQ=255) gCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTGCGAC‑CAAGGGCACCAAA‑GCGC‑CCCCGGCCAATTCCGCGAGAAAGCAACcaa > 1:3970401/1‑150 (MQ=255) gCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACaaa < 1:1802601/150‑1 (MQ=255) ccTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑GAAGGGCCGCATA‑GCGG‑CCCCGGCCATTTCCGCCTGTATGCAACAAAc > 2:2249610/1‑150 (MQ=255) ccTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTAATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAAc < 1:320120/150‑1 (MQ=255) cTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAAcc > 1:4575113/1‑150 (MQ=255) tGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCt < 2:2243324/150‑1 (MQ=255) gggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTg < 2:6020439/150‑1 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCCGCAATTTACCCGTGTATGCCACAAACCTggg > 2:2006832/1‑150 (MQ=255) aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGACAATTTCCGCGTGTATGCAACAAACCTGGGgc > 2:5395590/1‑150 (MQ=255) cGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgctg < 2:1225256/150‑1 (MQ=255) tgTCGGGCGGACATGAGCAACTCCTTTTGTAATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATg < 1:3684107/149‑1 (MQ=255) aGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATg < 1:3536743/150‑1 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc < 1:3356261/150‑1 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCG‑CAAGGGCCGCCGA‑GCGG‑CCCCCGCCCATTGCCCGGGTTTTGAACAAACCAGGGGCGGCGAAGCa > 2:1136436/1‑150 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑CAAGGGCCGCATA‑GCGG‑CCCCCGCAATTTCCGCGTGTATGCAACAAACCAGGGGCTGCTATGCa > 2:1567200/1‑150 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 2:4913982/150‑1 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAA‑GCGG‑CCCCCGCAAATTCCGCGGGTATGCAACAAACCACGGGCGGCTATGCa > 2:6708539/1‑150 (MQ=38) cGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑CAAGGGCCCCAAA‑GCGG‑CCCCCGCAAATTACCCGTGTATGCAACAAAACAGGGGCTGCTAAGCAGcccc > 2:3625962/1‑149 (MQ=37) cGGAAATTAGAAACTCCTTTTGTCTTGTGTCGCCTAAAGCATAGAAACACCGCTCTGGTGTGGGTGGGGCCTTTTGTCGCG‑AATGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGcccc < 1:2514105/150‑2 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc < 2:5539987/150‑1 (MQ=255) aTGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCG‑GAATGGCCCCCAA‑GCGG‑CCCCCGCCAATTAAGCCGGTGTTCAACAAAACACGGGCTGCGATGGAACCCattaac > 2:262493/1‑147 (MQ=255) aTGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcgc < 2:612137/150‑1 (MQ=255) tGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcgcg < 1:6389049/150‑1 (MQ=255) aGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGac < 2:3309346/150‑1 (MQ=255) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCCCCTGTATGCAACAAACCAGGCGCTGCTATGCAGCCCTTTCGCGaca > 2:2821260/1‑150 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCCTA‑TCGG‑CCCCGGCAAATTACGCGTGTATTCAACAAACCTGGGGCGGCAATGCACCCCGTTcgccccccaa > 2:5515059/1‑143 (MQ=37) cATGTGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGAGCGGCGTTGTGTCGCG‑ATCGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCGGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 1:2252439/150‑1 (MQ=38) cATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 2:2926563/150‑1 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCGTA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAcc > 1:5700571/1‑150 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTAt > 2:1201239/1‑93 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAcc < 2:2507833/150‑1 (MQ=255) gCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGCAAAGGGCC‑CAAA‑GCGGCCCCCGCCAATTTCCCGGTTTTTG‑AAAAAAACAGGGGGGGGTATTGCGCCCGTTGGCGACACAAGGCCCAAAAAGGACCgcgc > 2:324876/1‑150 (MQ=255) ccGACTGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AACGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCa < 1:6064805/150‑1 (MQ=255) aGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGGGTCGCC‑CAAGGGCCCCAGACCCGC‑CCCCGGCAATTGCGCCGGGTTTGC‑ACAAAACGGGGGCGGGGATGCCGCCCCGTGGCCGCCAAAGGCCCCCCAAGGGCCGCCCACGcct > 2:2426853/1‑148 (MQ=255) tAGCAACACCGCTCTGGTGTGGGTGCGGCCTTGTGTCGCT‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAgg < 1:2667420/150‑1 (MQ=255) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGccc < 2:2690276/150‑1 (MQ=255) aaCACCGCTCCGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCg < 2:6252267/150‑1 (MQ=255) cccGCTCTGGTGTGGGCGCGGCCTTGTGTCGCG‑AACGGCCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCGGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa < 1:2858901/149‑1 (MQ=38) acCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCG‑AAATGGCCGCAAA‑GCGG‑CCCCCGCAATTTACGCGTGTGTTCAACAAAACAGGGGCGGCTATGCAGCCCGTTAGCGACCCAACGCCCACAAAGGACCCCGCCGGCGTCAGGCCCGGac > 2:4674796/1‑149 (MQ=255) acCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGTGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa > 2:4002257/1‑150 (MQ=255) gcgctggTGTGGGTGGGGCGTTGTGTCGCG‑AACGGGCCGAATC‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTg < 1:6549717/145‑1 (MQ=38) gCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCCGCAATTTCCGCGGGTATGCAACAAACCTGGGGCTGCTATGCAGCCCGTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCGTCAGGCCCGGAAcag > 2:4572821/1‑148 (MQ=255) gctggTGTGGGAGGGGCCTTGTGGCGCT‑AATGGGCCGAATC‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGc < 1:78903/147‑1 (MQ=38) cAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGcc < 2:6681441/150‑1 (MQ=255) cAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTCCCGCGTGTATGCACCAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGcc < 2:6859714/150‑1 (MQ=255) ggTGTGGGCGCGGCCTTGTGTCGCG‑AACGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCa < 1:4361889/150‑1 (MQ=255) tgtgGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAgg < 2:450328/150‑1 (MQ=255) gAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc < 2:1103185/150‑1 (MQ=255) cGGCCTTGTGTCGCG‑AAAGGGCCCCAAA‑TCGG‑CCCCCGCAAATTACGCGTGTATGCAAAAAAACCGGGGCGGCTATTCAGCCCATTAGCGAAAAAAAGCCCACAAAAGAACCCCCAAGCATAAGGCCCCGAACAGGCCCAAGCAGgcgcg > 2:4735852/1‑150 (MQ=255) gCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCa > 2:1368517/1‑150 (MQ=255) gCCTTGTGGCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCa < 1:6779870/150‑1 (MQ=255) ttGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGGCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCt > 1:2138875/1‑150 (MQ=255) ttGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCt > 2:2764543/1‑150 (MQ=255) gtgtGGCG‑AATGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 1:4138737/150‑1 (MQ=255) gtgtCGCG‑AACTGGCCGCATA‑GCGG‑CCCCGGCAAGTTCCGCGTGTATGCAACAAACCTGGGTCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 1:1113230/150‑1 (MQ=255) gtgtCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 2:2177909/150‑1 (MQ=255) gtgtCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa > 2:6362866/1‑150 (MQ=255) gtgtCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 2:1017027/150‑1 (MQ=255) tCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc > 1:4954874/1‑150 (MQ=255) gcg‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:3901914/1‑150 (MQ=255) gcg‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:1702389/1‑150 (MQ=255) gcg‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 1:476148/1‑150 (MQ=255) gcg‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTAGGCAGCCCTTTCGCGACACAAGGCCCACCAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 1:664072/1‑150 (MQ=255) cg‑AAAGGGCCGCATA‑GCGC‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgcc < 1:779228/150‑1 (MQ=255) g‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACACACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa < 2:3802338/150‑1 (MQ=255) aaaGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAg > 2:5084538/1‑150 (MQ=255) cggggCCGCTAT‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGa > 1:1329387/3‑150 (MQ=255) ggggCCGCTAT‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGat > 2:4148349/2‑150 (MQ=255) ggggCCGCTAT‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGat > 2:3732735/2‑150 (MQ=255) gggCCGCTAT‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatc > 1:2865585/1‑150 (MQ=255) gCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat < 1:5129666/150‑1 (MQ=255) gCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat > 1:5798254/1‑150 (MQ=255) gCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat > 2:580993/1‑150 (MQ=255) gCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat < 2:4101654/150‑1 (MQ=255) ccGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc < 1:1050692/150‑1 (MQ=255) ccGCATA‑GCGG‑CCCCGACAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc < 1:5395590/150‑1 (MQ=255) cGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATcc > 1:3830173/1‑150 (MQ=255) cATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAg < 1:5301844/150‑1 (MQ=255) aTA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGc < 2:2140203/150‑1 (MQ=255) | CCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATA‑GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5560453‑5560749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |