| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 499,221 | C→G | 7.0% | intergenic (+62/‑234) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 499,221 | 0 | C | G | 7.0% | 500.3 / 11.2 | 165 | intergenic (+62/‑234) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (54/95); new base G (2/11); total (59/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 166 total aligned reads displayed.
ACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGC > NC_002947/499073‑499370 | aCCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACg < 2:2901630/150‑1 (MQ=255)aCCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACg < 2:6362076/150‑1 (MQ=255)aCCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCCCGAACg > 2:6311596/1‑150 (MQ=255) cccACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCCTG‑CCCGCGCACgg > 2:6431975/1‑150 (MQ=255) cccACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACgg < 2:3909924/150‑1 (MQ=255) ccACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGACGAAACC‑‑T‑‑GTGGGAGC‑GGGCATG‑CCCGCGAAGAggcc < 2:5113950/150‑1 (MQ=39) ccACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGACGAAACC‑‑T‑‑GTGGGAGC‑GGGCATG‑CCCGCGAAGAggcc < 2:447519/150‑1 (MQ=39) gcaagcgcccgaaaatcgggggtactgagagaatgccatcatccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCCCCAACAggc < 1:5248812‑M1/29‑1 (MQ=255) cacaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTTT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGggc < 1:3456839/150‑1 (MQ=255) cacaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCCTG‑CCCGCGAACGggc > 1:383805/1‑150 (MQ=255) cacaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGggc < 1:1035426/150‑1 (MQ=255) cacaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAACC‑‑T‑‑GTGGGAGC‑GGGCATG‑CCCGCGAAGAggccg < 2:963645/150‑2 (MQ=39) ggCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGCACGggcctggc > 1:1559088/1‑150 (MQ=255) aCGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGgcctggcctg < 2:4517065/150‑1 (MQ=255) cGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCctgc < 1:5584504/150‑1 (MQ=255) gCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCctgct < 1:3874079/150‑1 (MQ=255) gCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCAGGCctgct > 1:5121950/1‑150 (MQ=255) tGATGCAGAAGTTGAAAGTGACCTCGCTGGCGGAGCGGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGAt < 2:2458767/150‑1 (MQ=255) tGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGggcctg < 1:4135213/140‑1 (MQ=255) tGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGggcctg > 2:4135213/1‑140 (MQ=255) tGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGAtctc < 1:301148/150‑1 (MQ=255) tGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGAtctc < 1:2645982/150‑1 (MQ=255) gCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGGAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCAGGCCTGCTGATctct > 2:5248812/1‑150 (MQ=255) gCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATctct > 2:4974896/1‑150 (MQ=255) cAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTa < 2:3864807/150‑1 (MQ=255) ggttactgagataatgccatcatcgggatggatgttttgtgttagggatcgccctacaaggatggcgggtttggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTAt > 1:6149358‑M1/103‑150 (MQ=255) aGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTAt < 2:6013531/150‑1 (MQ=255) taatttGAAAGTGAACTCGCTGGCGGAGCTGGTTAATTACGCAATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGCCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATg < 1:5754817/146‑1 (MQ=255) aaGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATgg < 2:1494365/150‑1 (MQ=255) aaGTTGAAAGTGAACTCGCGGGCGGTGCTGGTGAAGTACGCCTTGGAGCACAAGCTGATCTGATTGCGACATCCGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGTGC‑GGGCAGG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATgg < 1:4653043/150‑1 (MQ=255) ttGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGcgg > 2:4368876/1‑148 (MQ=255) ttGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCCCGAACCGGCCAGGCCAGCTGATCGCTATGGCTg > 2:3034466/1‑150 (MQ=255) tGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGa < 1:4285849/150‑1 (MQ=255) ttaaCTCGCTGGCGGAGCTGGTTAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGc < 1:5297065/148‑1 (MQ=255) tGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCGCAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGc < 2:4204695/150‑1 (MQ=255) tGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGc < 2:784970/150‑1 (MQ=255) atgccatcatccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAA‑GAG‑‑‑‑GCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTc > 2:3484695‑M1/90‑150 (MQ=255) gCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTcg < 1:2588762/150‑1 (MQ=255) cTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCAAG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCACTTcgc > 2:6152596/1‑150 (MQ=255) atccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTcgcg > 1:2137058‑M1/82‑150 (MQ=255) ggCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑TCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 1:1106584/150‑1 (MQ=255) ggCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 1:3111609/150‑1 (MQ=255) ggCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 2:6360023/150‑1 (MQ=255) gCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCAGG‑CCCCCGAACGGGCCTGGCCTGGTGATCTCGAAGGCTGAGCCGGCCGCATAGCggg > 1:6224685/1‑150 (MQ=255) cggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgacgccTATGTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 2:2522618‑M1/79‑150 (MQ=255) cggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaagccTATGTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 2:5817055‑M1/79‑150 (MQ=255) cggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGc > 1:3204653‑M1/79‑150 (MQ=255) gcgCTGGTGAAGTACGCCATGGAGCACACGCTGATCTGATTGCGACATAGGGGTGCCCGACACTTGCCGAAGCCTAT‑‑GGGGGAGC‑GGGCTTG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCAt < 1:144834/148‑1 (MQ=255) tGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGccc < 1:5023832/150‑1 (MQ=255) gTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGACGCCTAT‑‑GTGGGAGC‑GGGCAGG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGc < 1:2063086/150‑1 (MQ=255) gTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGc < 2:5584312/150‑1 (MQ=255) tGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 1:3457857/1‑139 (MQ=255) tgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 1:4390974‑M1/70‑1 (MQ=255) tgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 2:4390974‑M1/66‑135 (MQ=255) gTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCCCGAACGGGCCGGGGCGGGTGTTGTGTATGGGTGCGCCGGCCTCTTCGCGGGCAAGACCGCGcccc > 1:6726774/1‑149 (MQ=255) cGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGGATT‑GCCGCGAACGGGGGTGGGCTTGTGATATATATTTGTTAGCCGGCCTATTAGCGGGCATTACCGCAGCCACAg > 1:3289832/1‑150 (MQ=255) cGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCAAG‑CGCGCGAAAGGGCCAGGCCAGCGGATCTCGAAGGCTGAGCCGGCCTCCTCGCGGGCCTGCCCGCGCCCCCAg > 2:4331486/1‑150 (MQ=255) gCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCCCGCACGGGCCGGGCCAGCGGGTCTCTAAGGCTGGGCCGGCCGCGTCGCGGGCCAGCCCCCAccccccgg > 2:1257137/1‑145 (MQ=255) aTGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCCTG‑GCCCCGCACGGGCCGGGCCGGGGGGTCTCAAATGCGGGGCCCGCCGCGTAGCGGGCCTGCCCGCGCCcccacggtt > 2:2857876/1‑145 (MQ=255) acaAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGGCTG‑CCCCCGAACCGGCCAGGGCGGCGGGTCTCTATTGCGGGGCCGGCCGCATCGGGGGGCTGCCCCCGCCCACACGTTTAGTGGtt > 2:49530/1‑150 (MQ=255) aaGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCAGCTGATCTCTATGGCTGAGCCGGCCACGTCGCGGGCAAGCCCCCTCCCACAGGTTTCGTGGTTgg > 2:3564014/1‑150 (MQ=255) ctgctctgatTGCGACATCCGGGGGCCCGAACCTGGCGGACGCCTTT‑‑GTGGGCGC‑GGGCATC‑CCCGCGACCGGGCCGGGCCTGCTGATCTCTATGGCGGCGCCGGCCTCTTCGGGGGCAGGCCCGCTCCCACAGGTTTCGTGGTTGGCTc < 2:417104/150‑1 (MQ=255) ttGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCGTCGCGGGCATGCCCGCACCCACACGTTTCGTGGTTGGCTCGCAACGGCa > 2:2827002/1‑150 (MQ=255) gACATACGGGTGCCCGAAACGTGCCGAAGCCTTT‑‑GTGGGCGC‑GGGCATG‑CCCGCGAACGGGCCGGGCCTGCTGATCTCTTTGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTcc < 2:4973659/150‑1 (MQ=39) ggTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCCAACGGGCCTGGCCGGCTGCTCTCTATGGCTGAGCCGGCCGCGTCGCGGGGCTGCCCGCTCCCACACGTTTAGGGGGTGGCTCGCAAGGGCAGTCCCATCCCGc > 2:979384/1‑150 (MQ=255) ggTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCCCGAACCGGCCTGGCCGGCTGATCTCTATGGCTGAGCCGGCCTCGTCGCGGGCATGCCCGCGCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCAATCCAAAACCGc > 2:6702706/1‑150 (MQ=255) ccttgcgagccaaccacgaagccTATGTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 1:3305385‑M1/72‑1 (MQ=255) ccGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCAGG‑CCCGCGAACGGGCCTGGCCTGCTGCTCTCGATGGCTGTGCCGGCCGCTTCGCGGGCCTGCCCGCGCCCCCACGTTTCGTGGTTGGGTCGCAAGGGCCTTCCAAAACCGCCAAcc > 2:2632415/1‑150 (MQ=255) taacgttGCCGTCGCCTTT‑‑GTGGGCGC‑GGGCTGG‑CCCGCTACGGGGCCTGGCCTGCTGAGCTCTATGGCTGCGCCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCtt < 1:6213631/145‑1 (MQ=37) gAAACTGGCCGAAGCCTTG‑‑GTGGGCGC‑GGGCCTG‑CCCGCGACCGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCACTTCGCGGGCAGGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCtt < 2:1495011/150‑1 (MQ=255) caaCTTGCCGACGCCTTT‑‑GGGGGCGG‑GGGCAGG‑CCCGCCACGGGGCGGGGCCTGCTGATCTCTTGGGGTGCGCCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTg < 2:1801454/149‑1 (MQ=25) aacctggCCGAAGCCTCG‑‑GTGGGAGC‑GGGCAGG‑CCCGGTACCGGGCCTGGCCTGCTGATCTATATGGCTGAGCCGGCCTCTGCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTg < 2:1801391/144‑1 (MQ=38) accTTGCCGAAGCCTAT‑‑GTGGGTGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGt < 2:3398654/148‑1 (MQ=255) aaCTTGCCGACGCCTTT‑‑GTGGGAGG‑GGGCAGG‑CCCGCGACCGGGCGGGGCGTGCTTATCTCTTGGGCTGCGCGGGCCTGTTCGGGGGCTTGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGt < 2:3032029/150‑1 (MQ=255) aCTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCGGGCCGGCGGATCTCGATGGCGGAGCCCGCCACGTCGCCGGCAGGCCCGCTCCCACACGTTTCGTGGTTGGCTCGCAAGGGCAATCCAAACCCCCCAACCATgga > 2:3375155/1‑148 (MQ=255) cTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCGATGGCGGAGCCGGCCTCGTCGCGGGCATGCCCGCTCCCCCAGGTGTCGGGGGTGGCGCGCAAGGGCCTTCCCCGCCCGCCATCCTTGTAg > 2:5581800/1‑150 (MQ=255) tggCCGACGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGACCGGGCCTGGCCTGCTGATCTCTCTGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgg < 2:3248414/148‑1 (MQ=255) cgCCTTT‑‑GTGGGCGG‑GGGCATG‑CCCGCGACGGGGCGTGGCCTGCTTATCTCTTTGGGTGCGCCGGCCTGTTCGGGGGCTTGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATcc < 2:1401404/149‑1 (MQ=255) cTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTa < 2:6224685/150‑1 (MQ=255) cT‑‑GTGGGAGC‑GGGCATG‑CCCGTGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTaca < 1:3367666‑M1/149‑1 (MQ=255) t‑‑gtgGGGGCGGGGCCTGCCCCGCGAGCGGGCCGGCCGTGCTGATCTCTTTGGCTGCCCCGCCCTCGGCGGGGCCAGCCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTac < 1:4244090/150‑1 (MQ=255) gtgGGAGC‑GGGCATG‑CCCGCCAACGGGCCTGGCCTGCGGTGCTCTATTGCAGAGCCCGCCTGCTGGCGGGCATGCCCGCTCCCACAGGTTTGGTGGTTTGGTCGCAAGGGCCATCCCATACCGCCAACCGTGTAGGGCGAACCCAacacc > 2:4807353/1‑148 (MQ=255) ccgttcGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCGATGGCTGCGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCCTTCCCATCCCGCCAACCTTGGAGGGCGCTCCCTacaac < 2:5284317‑M1/144‑1 (MQ=255) GGGCAGG‑CCGGCTATGGGGCCGGGCGTGGTTATTTCTTTGGCTGAGCGGGCCTCTTCGGGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTc > 2:1214517‑M1/1‑150 (MQ=255) ggatTG‑CCCGCGACCGGGCCTGGCCTGCTGATCTCTTTGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTcc > 2:1552405‑M1/5‑150 (MQ=255) GGCTTG‑CCCGCGAAGGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTcc > 2:5333693‑M1/1‑150 (MQ=255) CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCgg < 2:3459606‑M1/150‑1 (MQ=255) CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCgg < 1:2575206‑M1/150‑1 (MQ=255) CCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCCTTCCAATCCCGCCATCCGTGTAGGGCGATCCCTACAACAAATCTTCCATCCGga < 1:3618862‑M1/150‑1 (MQ=255) CCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGga < 1:6198212‑M1/150‑1 (MQ=255) CCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGga < 2:5886630‑M1/150‑1 (MQ=255) CCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGga < 2:4547482‑M1/150‑1 (MQ=255) CCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGga < 2:3858498‑M1/150‑1 (MQ=255) cgtgAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgat < 2:3367666/147‑1 (MQ=255) CGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCCTTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCAGCCGgat < 1:1877363‑M1/150‑1 (MQ=255) CGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATACGgat < 1:5912450‑M1/150‑1 (MQ=255) CGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTAGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGAGCCCTACAACAAATATTCCAACCGgat < 1:2285161‑M1/150‑1 (MQ=255) AACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGatgatg < 1:4588491‑M1/150‑1 (MQ=255) ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATgg < 1:4970194‑M1/150‑1 (MQ=255) cGGGCCTGGCGTTTTTTTCTATTTGGTTGAGCGGGCCTCTGCGGGGTCTTGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGc < 2:4590266/150‑1 (MQ=255) | ACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGC‑GGGCATG‑CCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGC > NC_002947/499073‑499370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |