| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,775 | A→G | 15.7% | intergenic (‑170/+64) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,775 | 0 | A | G | 15.7% | 590.8 / 86.1 | 247 | intergenic (‑170/+64) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base A (82/116); new base G (23/15); total (105/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.35e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.40e-01 | |||||||||||
Only 100 of 251 total aligned reads displayed.
GGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGA > NC_002947/5902626‑5902924 | gggCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATa < 1:804866/150‑1 (MQ=255) cgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGACTACgg > 2:2525807/1‑150 (MQ=255) gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCgat < 2:3801348/150‑3 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 2:3987657/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 1:1903062/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGATTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 2:517295/150‑1 (MQ=255) cGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACggtgg > 2:2959458/1‑150 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTc < 2:1697191/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTGTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTc < 2:3827053/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt > 2:329058/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCAGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 1:5312377/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtggtgcatc < 2:4031235/150‑6 (MQ=255) agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGc < 1:6820566/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc < 1:1131238/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 2:1778932/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 1:2638839/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa > 2:4328240/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGGGGTCGATGCCCCATCGCAt > 1:1052337/1‑150 (MQ=255) ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcg < 2:5081500/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:2263329/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGGCGATGCACCATCGCATTcgc > 2:5464504/1‑150 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑gg < 2:3472269/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:3566932/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:1979955/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 2:2869555/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:1427977/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:4514581/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 2:1621426/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:476329/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:5604043/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:5349330/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑gg < 1:5145691/150‑1 (MQ=25) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑c < 1:228335/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑ccc < 2:1963954/150‑1 (MQ=255) ttGAGGGCAATTGTTGTGAGGGGGGATTATTCTTAAATATTCTGTTTTAGAATTTTTATATAACCATTTATGAGAACACGCCTCTGGTAGGTGCGGGTTTACCCGCGAATACGGTGGTCGTTGCACCTTCGAATTCGC‑GGGTAAA‑CCCGc < 1:6265161/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGGCGATGCACCATAGCATTCGC‑GGGTAAA‑CCCGc > 1:457532/1‑150 (MQ=255) tGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATAAGGTGGTCGATGCACCATCGCATTAGC‑GGGTAAA‑ACCGCt > 1:3805539/1‑150 (MQ=255) aGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTCGC‑GGGTAAA‑ACCGCTcc > 2:763381/1‑150 (MQ=255) gggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCt > 2:1466501/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGGGAAAACCGGGGTGGGTTCCCCATCGCATTCGCGGGGTAAA‑ccgcgccgg > 1:6311531/1‑143 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAAAGGTGGTCGATGCACCATCGCAATCGC‑GGGTAAA‑CCCGCGccaa > 1:2710081/1‑148 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCa > 2:6184095/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCa > 2:4973168/1‑150 (MQ=255) agtagtGCGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAggg < 2:4611588/150‑1 (MQ=255) agtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGcc < 2:6091684/150‑1 (MQ=255) gtGAGGCGTGATTATTATTAAAAATACTTTTTAAGATTTTTTATATAACAATTTAACAGACCACGCCTGTGGTAGGAGGGGTTTTACCCGCTAATCCGGTGGTCGATCCACCCTCGCATCCGG‑GGTTAAC‑CCCGCTCCTACCAGGGGCCa < 2:2279689/150‑1 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGTACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCa > 2:5394474/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTAAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGAGGcgt < 2:5209071/150‑3 (MQ=18) tGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGCACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCCCCATCGCAGTCGC‑GGGTAAA‑CCCGCTCCTACCAGAGGcgtg < 2:5594657/150‑4 (MQ=38) ggCGGTATTATTCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATTTGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATg < 1:1608597/150‑1 (MQ=255) gggtttttattCTTAAAAATCCTGTTTAATATTTTTTATATAACAATTTAAGACAACACGCCTCTGTTCGGAGCGGGTTTACCGGCTATTAGGGTGGTCGATGCACCATCGCTTTCGC‑GGTTAAA‑CCCGCTCCTACCAGGGGCCATATgg < 1:1570251/144‑1 (MQ=255) gggATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTACCCGCGAATACGGGGGTGGGTGCCCCATCGCAATGGC‑GGGTGAA‑CCCGCTCCGACCACGGGGCAGATGGGc > 1:6426049/1‑150 (MQ=255) tattatTAAAAATACTTTTTAATATTTTTTATATAACAATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGAAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 1:3378939/150‑1 (MQ=38) tattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTACCGCGAAAAACGTGGTCGCTGCACCATCGCAATGGC‑GGGGAAA‑CCCGCTCCGACCCGGGGCCCGATGGGCCGTCa > 1:5261846/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCCCCATCGCATTAGC‑GGGTAAA‑CCCGCACCAACCAGGGGCCCTATGGGCCGTCAGGCgt > 1:418771/1‑150 (MQ=38) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCCCTCCTACCAGGGGCCATATGGGCCGTCAGGCgt > 1:2831569/1‑150 (MQ=255) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtggt < 1:3372143/84‑1 (MQ=255) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtggt > 2:3372143/1‑84 (MQ=255) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgtgt < 2:2776057/150‑1 (MQ=255) aaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGttt < 1:5650076/150‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAACGCAATCGC‑GGGTAAA‑CCCCCTCCGACCAGGGGCCATATGGGCCGTCAGGCGTGTTTCTGCGGCt > 2:5387101/1‑150 (MQ=38) cataaTTTTTATATAACCATTTAAGACACCACGCCTCTGGTCGGCGGGGGTGTACCCGCGAATAGGGGGGGCGCCGCACCACGGCATGCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 1:5498651/147‑1 (MQ=255) taACCATGTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:3183152/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 2:262196/1‑150 (MQ=255) aaCAATTTAATAGAACACGCCTCTGGTAGGAGCGGTTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGC‑GGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 1:6731477/150‑1 (MQ=39) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCAGGCCAc > 2:6756895/1‑150 (MQ=255) ttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAGAAGGGGGTCGATGCACCAAGCCATTCGC‑GGGTAAA‑CCCCCTCCAACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCg > 1:3135790/1‑150 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCTcc < 2:3080426/150‑1 (MQ=255) cGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCgg < 2:3739138/150‑1 (MQ=255) ccctGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg > 2:1082284/3‑150 (MQ=18) ggTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 2:3389165/150‑1 (MQ=255) ggTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:3907973/150‑1 (MQ=255) cggtgCGGGTTTACCCGCGAAGAGGGTGGTCGTTGCACCCTCGCATTCGG‑GGTTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagc < 1:6523611/146‑1 (MQ=255) ggAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTCCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagca < 2:1879700/150‑1 (MQ=255) ggAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCCCCCGCGCATGCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagca < 2:5811266/150‑1 (MQ=39) gAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag > 2:5640015/1‑150 (MQ=255) gggTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTc < 2:1887404/150‑1 (MQ=255) gTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:4477538/1‑150 (MQ=25) ttcccccGCGAATTCGGTGGTCGATCCACCTTCGCTTTCGG‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGc < 1:2437769/146‑1 (MQ=255) tACCCGCGAATACGGTGGTCGATGCACCACCGCATTCG‑‑GGGTAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCaa < 1:1466501/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 2:6355324/1‑103 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2156707/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:6608969/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:424521/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:453074/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1289817/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5026289/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5566440/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2018690/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3326671/1‑150 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:425811/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2984772/1‑150 (MQ=25) cgcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:3873317/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5621212/1‑150 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:1302879/1‑150 (MQ=37) gcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:6426814/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:3714521/1‑150 (MQ=255) gAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 1:1245800/125‑1 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:476981/150‑1 (MQ=255) aCGGTGGTCGAGCCACCCTCGCCTCCGG‑GTGTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:5464504/150‑1 (MQ=255) | GGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGA > NC_002947/5902626‑5902924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |