| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,778 | G→A | 15.5% | intergenic (‑173/+61) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,778 | 0 | G | A | 15.5% | 581.1 / 79.4 | 232 | intergenic (‑173/+61) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (79/117); new base A (23/13); total (102/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.05e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 252 total aligned reads displayed.
CGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGA > NC_002947/5902629‑5902927 | cgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGACTACgg > 2:2525807/1‑150 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 1:1903062/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGATTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 2:517295/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTc < 2:1697191/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 2:3450031/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtggtgcatc < 2:4031235/150‑6 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc < 1:1131238/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 2:1778932/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 1:4329132/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 1:2638839/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa > 2:4328240/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGGGGTCGATGCCCCATCGCAt > 1:1052337/1‑150 (MQ=255) ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcg < 2:5081500/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:2263329/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:3382188/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGGCGATGCACCATCGCATTcgc > 2:5464504/1‑150 (MQ=255) tGCGCCTGGCTTGAGGGCACTAGTAGTGAGGCGGGATTATTCTTACAAATACTGTTTAAGAATTTTTATATAACCATTTCAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑gg < 2:6092850/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:5349330/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 2:2869555/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:5301832/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:3566932/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:1427977/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:1979955/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑gg < 1:5145664/150‑1 (MQ=25) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑ggg < 2:5848489/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑gg < 1:5587268/144‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑c < 1:5432068/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑c < 1:228335/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑c < 2:3045010/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAATATTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑ccc < 1:4703201/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑ccc < 2:1963954/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGGCGATGCACCATAGCATTCGC‑GGGTAAA‑CCCGc > 1:457532/1‑150 (MQ=255) tGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATAAGGTGGTCGATGCACCATCGCATTAGC‑GGGTAAA‑ACCGCt > 1:3805539/1‑150 (MQ=255) aGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTCGC‑GGGTAAA‑ACCGCTcc > 2:763381/1‑150 (MQ=255) gggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCt > 2:1466501/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGGGAAAACCGGGGTGGGTTCCCCATCGCATTCGCGGGGTAAA‑ccgcgccgg > 1:6311531/1‑143 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAAAGGTGGTCGATGCACCATCGCAATCGC‑GGGTAAA‑CCCGCGccaa > 1:2710081/1‑148 (MQ=255) cAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTAGC‑GGGTAAA‑CCCCCTCCTAcc > 1:6779959/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCa > 2:6184095/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAga > 2:3341349/1‑149 (MQ=21) agtagtGCGGCGGTATTATTCTTAAAAATACTGTTAAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAggg < 1:6208552/150‑1 (MQ=255) agtagtGCGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAggg < 2:4611588/150‑1 (MQ=255) gtGAGGCGTGATTATTATTAAAAATACTTTTTAAGATTTTTTATATAACAATTTAACAGACCACGCCTGTGGTAGGAGGGGTTTTACCCGCTAATCCGGTGGTCGATCCACCCTCGCATCCGG‑GGTTAAC‑CCCGCTCCTACCAGGGGCCa < 2:2279689/150‑1 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGTACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCa > 2:5394474/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTAAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGAGGcgt < 2:5209071/150‑3 (MQ=18) tGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGCACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCCCCATCGCAGTCGC‑GGGTAAA‑CCCGCTCCTACCAGAGGcgtg < 2:5594657/150‑4 (MQ=38) ggCGGTATTATTCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATTTGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATg < 1:1608597/150‑1 (MQ=255) gggtttttattCTTAAAAATCCTGTTTAATATTTTTTATATAACAATTTAAGACAACACGCCTCTGTTCGGAGCGGGTTTACCGGCTATTAGGGTGGTCGATGCACCATCGCTTTCGC‑GGTTAAA‑CCCGCTCCTACCAGGGGCCATATgg < 1:1570251/144‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATgg < 2:3266110/150‑1 (MQ=255) tattatTAAAAATACTTTTTAATATTTTTTATATAACAATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGAAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 1:3378939/150‑1 (MQ=38) tattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTACCGCGAAAAACGTGGTCGCTGCACCATCGCAATGGC‑GGGGAAA‑CCCGCTCCGACCCGGGGCCCGATGGGCCGTCa > 1:5261846/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCCCCATCGCATTAGC‑GGGTAAA‑CCCGCACCAACCAGGGGCCCTATGGGCCGTCAGGCgt > 1:418771/1‑150 (MQ=38) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCCCTCCTACCAGGGGCCATATGGGCCGTCAGGCgt > 1:2831569/1‑150 (MQ=255) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtggt < 1:3372143/84‑1 (MQ=255) aaaaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgtgt < 2:2776057/150‑1 (MQ=255) aaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGttt < 1:5650076/150‑1 (MQ=255) tACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg > 2:1607230/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAACGCAATCGC‑GGGTAAA‑CCCCCTCCGACCAGGGGCCATATGGGCCGTCAGGCGTGTTTCTGCGGCt > 2:5387101/1‑150 (MQ=38) cataaTTTTTATATAACCATTTAAGACACCACGCCTCTGGTCGGCGGGGGTGTACCCGCGAATAGGGGGGGCGCCGCACCACGGCATGCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 1:5498651/147‑1 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCtt < 2:3816777/150‑1 (MQ=255) tatataCCCATTAAAGCGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 1:1272345/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 2:262196/1‑150 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCAGGCCAc > 2:6756895/1‑150 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTAGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCCGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAc > 1:6828373/1‑150 (MQ=255) ttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAGAAGGGGGTCGATGCACCAAGCCATTCGC‑GGGTAAA‑CCCCCTCCAACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCg > 1:3135790/1‑150 (MQ=255) tacaaCCCGCCTCTGTGTGGCGGGGGTTCACCGTCTAATAGGGTGGTCGTTGCACCATCGCTTTCGC‑GGGAAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 1:436637/147‑1 (MQ=255) gagcccccGCCTGTGGTTGGCGGGGGTTTCCCCGCGAAGCGGGGGGGCGAGCCACCCTCGCCGGGGG‑GGGTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 1:671569/143‑1 (MQ=255) ccctGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg > 2:1082284/3‑150 (MQ=18) ggTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:3907973/150‑1 (MQ=255) cggtgCGGGTTTACCCGCGAAGAGGGTGGTCGTTGCACCCTCGCATTCGG‑GGTTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagc < 1:6523611/146‑1 (MQ=255) ggAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTCCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagca < 2:1879700/150‑1 (MQ=255) gAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag > 2:5640015/1‑150 (MQ=255) gCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 2:3794176/1‑150 (MQ=255) gggTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTc < 2:3976943/150‑1 (MQ=255) gggTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTc < 2:1887404/150‑1 (MQ=255) gTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:4477538/1‑150 (MQ=25) ttcccccGCGAATTCGGTGGTCGATCCACCTTCGCTTTCGG‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGc < 1:2437769/146‑1 (MQ=255) tACCCGCGAATACGGTGGTCGATGCACCACCGCATTCG‑‑GGGTAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCaa < 1:1466501/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 2:6355324/1‑103 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 1:6355324/103‑1 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3296587/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2156707/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:6608969/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3164103/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:453074/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:368792/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5566440/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2018690/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5026289/1‑150 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:425811/1‑150 (MQ=37) cgcgAATGCGATGGTGCATCGACCACCGTATTCGC‑GGGTAAA‑CCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2984772/1‑150 (MQ=25) cgcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:3873317/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5621212/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:6426814/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:3714521/1‑150 (MQ=255) gAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg > 2:1245800/1‑125 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAACAGCGTCAGCAAGGTCGCCACg > 2:492272/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTCCCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:5004974/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:1803296/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 1:1245654/1‑150 (MQ=255) | CGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGC‑GGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGA > NC_002947/5902629‑5902927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |