| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,783 | C→G | 16.7% | intergenic (‑178/+56) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,783 | 0 | C | G | 16.7% | 600.4 / 104.1 | 240 | intergenic (‑178/+56) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (80/117); new base G (27/13); total (110/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.74e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.48e-01 | |||||||||||
Only 100 of 243 total aligned reads displayed.
GGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCC > NC_002947/5902634‑5902931 | ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTc < 2:1697191/150‑1 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAAAGGTGGTCGa > 1:4115019/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 2:3450031/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt > 2:329058/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 2:1839174/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 1:3059274/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCAGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 1:5312377/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 1:2023341/150‑1 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc < 1:1131238/150‑1 (MQ=255) tGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAt < 1:2272350/150‑1 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCg > 2:5175449/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGGGGTCGATGCCCCATCGCAt > 1:1052337/1‑150 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:3382188/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:4531035/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 2:2263329/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCACTAGTAGTGAGGCGGGATTATTCTTACAAATACTGTTTAAGAATTTTTATATAACCATTTCAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:6092850/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5425605/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5080538/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:4519269/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:1427849/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:3566932/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:1621426/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5604043/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGATGGTGCATCGACCACCGTATTCGCgg < 2:6819774/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5145691/150‑1 (MQ=25) tGCGCCTGGCTGGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:5544045/150‑1 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGGTGCCCCCTCGCATTAGCGGGTa > 1:1942331/1‑150 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCCTCGCAATCGCGGGTa > 2:6479926/1‑150 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAAGGTGGTAGATGCACCAAAGCATTAGCGGGTa > 1:3377179/1‑150 (MQ=255) ccTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACACGCGCATAAGGTGGTCGATGCACCAACGCAATAGCGGGTaa > 1:1514452/1‑150 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑ccc < 2:5605774/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGc < 2:5417567/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAA‑ACCGc > 1:457544/1‑150 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACCCGCAAACGGTGGTCGATGCACCATCGCAATAGCGGGTaaaaaccc > 1:2579998/1‑145 (MQ=255) tGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATAAGGTGGTCGATGCACCATCGCATTAGCGGGTAAA‑ACCGCt > 1:3805539/1‑150 (MQ=255) aGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTCGCGGGTAAA‑ACCGCTcc > 2:763381/1‑150 (MQ=255) gggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCt > 2:1466501/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCGCGGATAAGGGGGTGGATGGACCAAAGCAATTGCGGGTAAA‑ccccggccaa > 1:6311428/1‑143 (MQ=255) aTAGTAGTGCGGCGGTTTTATTATTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGCGAACACGCCTCTGGTAGGAGGGGGTTTACCCGCGAATCCGGTGGTCGATGCACCAGCGCATTCGGGGGTAAA‑CCCGCTCCTA‑CCAg < 1:4964683/150‑1 (MQ=37) tagtagTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAgg < 2:4950941/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAgg > 2:4483397/1‑150 (MQ=255) agtagtGCGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAggg < 2:4611588/150‑1 (MQ=255) agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAggg < 2:6240975/150‑1 (MQ=255) gtGAGGCGTGATTATTATTAAAAATACTTTTTAAGATTTTTTATATAACAATTTAACAGACCACGCCTGTGGTAGGAGGGGTTTTACCCGCTAATCCGGTGGTCGATCCACCCTCGCATCCGGGGTTAAC‑CCCGCTCCTA‑CCAGGGGCCa < 2:2279689/150‑1 (MQ=255) gAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCata < 2:6006157/150‑1 (MQ=255) ggCGGTATTATTCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATTTGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATg < 1:1608597/150‑1 (MQ=255) gCGGCATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCTTTTACGAGAACACGCCTCTGGTCGGAGGGGGTTTACCCGCGAATCGGGTGGTCGCTGCACCATGGCCTTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATgg < 2:2868426/150‑1 (MQ=38) gggATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTCCCGCGCATAAGGGGGTGGATTCACCCTCGCCTTCGCGGGTAAA‑CCCGCGCCAA‑CCCGGGGCCCTAAGGGc > 1:2683702/1‑150 (MQ=255) ttattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCCCGCATACCGTGGGCGCTTCCCCCTCGCAGTGGCGGGTAAA‑ACCCCGCCGACCCCGGGGCCA‑ATggggcggc > 1:5281006/1‑145 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGTTTTACCCGCGAATACGGTGTTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCgt < 2:1766358/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCCCTCCTA‑CCAGGGGCCATATGGGCCGTCAGGCgt > 1:2831569/1‑150 (MQ=255) aaaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGttt < 1:5650076/150‑1 (MQ=255) tACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACGCGAAAACGGTGGTCTATGCAAAATAGCATTACAGGGTAAA‑ACCCATCCGA‑ACAGATGCCAAAAGGGTCATCAGGCGTGTTTCTg > 1:556013/1‑150 (MQ=255) tGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTCGGTGCACCAAACCATTCGCGGGTAAA‑CCCCCTACAA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCgg > 2:1913724/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCt > 2:5387466/1‑150 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:4306695/150‑1 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCtt < 2:3816777/150‑1 (MQ=255) tatataCCCATTAAAGCGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 1:1272345/150‑1 (MQ=255) taACCATGTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAC‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:3183152/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGTGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 1:3285061/1‑150 (MQ=255) aaCAATTTAATAGAACACGCCTCTGGTAGGAGCGGTTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 1:6731477/150‑1 (MQ=39) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTAGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCCGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAc > 1:6828373/1‑150 (MQ=255) gacaccccGCCTGTGGTTGGTGGGGGTTTCCCCGGTAATGGGGGGGTCGTCGCCCCATGGCATCCGCGGGTAAC‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 1:233378/143‑1 (MQ=255) agaACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAg > 2:5342731/1‑150 (MQ=255) ccacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAgcgc < 2:4361331/149‑1 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGcc < 2:3829507/150‑1 (MQ=255) ccTCTGGTAGGAGCGGGTTTACCCCCGCATACCGTGGTCGAAGCACCAACGCAGTCGCGGGTAAA‑CCCGCACCTA‑CCACGGGCCCTAAGGGCCTACAGGCGGGTGTCGGCGGCTCGCGGATCGTGTACCACGCCACGGACAGCGCCGGcc > 2:2590823/1‑149 (MQ=255) ccctGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg > 2:1082284/3‑150 (MQ=18) tGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa < 2:2710081/150‑1 (MQ=255) ggTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:3907973/150‑1 (MQ=255) ggAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCCCCCGCGCATGCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagca < 2:5811266/150‑1 (MQ=39) gCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 2:3794176/1‑150 (MQ=255) gCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 2:4138831/1‑150 (MQ=255) gttgTTCACCCGGTAATCGGGTGTTCGTTCCACCTTCGATTGCGGGTGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGt < 1:6632490/147‑1 (MQ=255) gggttttACCCGCGATTCGGGTGTGCGTTGCACCATGGCATGCGGGGTTAAC‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGt < 1:1187190/146‑1 (MQ=255) gggTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTc < 2:3976943/150‑1 (MQ=255) gggTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTc < 2:1887404/150‑1 (MQ=255) ttACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCa < 2:5171439/150‑1 (MQ=255) tACCCGCGAATACGGTGGTCGATGCACCACCGCATTCG‑GGGTAAACCCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCaa < 1:1466501/150‑1 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 2:6355324/1‑103 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 1:6355324/103‑1 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:6608969/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1289817/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3164103/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:424521/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:368792/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5566598/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3326671/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2951184/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:5621250/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCGCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:2075023/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:3714521/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:2924439/1‑150 (MQ=255) aCGGTGGTCGAGCCACCCTCGCCTCCGGGTGTAAC‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:5464504/150‑1 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTC‑CCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:5004974/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 1:6752014/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:1803296/1‑150 (MQ=255) gtggtCTATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga < 1:4360963/150‑1 (MQ=255) ggtCGTGGCACCTTCGCTTTGGGGGGTAAC‑CCCGCTCCTA‑CCTGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATc < 1:6479926/150‑1 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 1:6247432/150‑1 (MQ=255) | GGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTA‑CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCC > NC_002947/5902634‑5902931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |