| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 883,809 | T→G | 8.7% | intergenic (+44/‑284) | PP_0766 → / → PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 883,809 | 0 | T | G | 8.7% | 373.7 / 19.5 | 123 | intergenic (+44/‑284) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (28/83); new base G (2/9); total (30/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 124 total aligned reads displayed.
GGCCCTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGC > NC_002947/883660‑883953 | ggCCCTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCt > 2:6293274/1‑150 (MQ=255) gCCCTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTc < 1:130715/150‑1 (MQ=255) ttGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCg < 2:2188886/150‑1 (MQ=255) ttGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCg < 1:6634585/150‑1 (MQ=255) tGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCgg > 1:5308870/1‑150 (MQ=255) tGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCgg < 1:6493881/150‑1 (MQ=255) gggATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCggg < 1:4336757/150‑1 (MQ=255) gggATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCggg < 1:2681430/150‑1 (MQ=255) gATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGc < 1:1170887/150‑1 (MQ=255) gATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGc < 1:5771851/150‑1 (MQ=255) aTGAAGAACGAAGAGAAACGTTCCTACGACTTAGGATTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCTCTGCGTCTGTCGGGTATTCGCTAATCTGAACTCACTGAACGCCGTGTGATACCCAG‑CACGCACCGGCGAGCCGTGGCg < 2:5093631/150‑1 (MQ=255) tGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGt < 2:3575692/150‑1 (MQ=255) tGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGt < 2:3575842/150‑1 (MQ=255) aagaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGttt < 2:2853486/150‑1 (MQ=255) agaaCGAAGAGAAACGTGCCTACGACTTCGGCTTGAGTGCCAGCAAGGCAGATTTCCAGCCCTCAGCTCTGCGTCAGTCGGGTATTCGCTAAGCTTAAATCACTGAACGCCGTTTGATCCCCAG‑AACGGCGAGGCTCGCCGGTGGGTTTc < 2:4289974/150‑1 (MQ=255) agaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGt < 2:5357601/147‑1 (MQ=255) agaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGt > 1:5357601/1‑147 (MQ=255) aaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTa > 1:1199861/1‑150 (MQ=255) aaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAA‑AACGCCCCGGCGAGCCGGGGCGttctgg < 2:3637069/150‑5 (MQ=255) aaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAA‑AACGCCCCGGCGAGCCGGGGCGttctgg < 2:3637217/150‑5 (MQ=255) aCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGCGttctggg < 2:6694288/150‑6 (MQ=255) cGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAAACGCCCCGGCGAGCCGGGGCGttctggg < 1:4454748/150‑6 (MQ=255) aaGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTc < 1:6212538/150‑1 (MQ=255) aaGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTc < 2:5908906/150‑1 (MQ=255) gagaAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCt > 2:192531/1‑150 (MQ=255) aaaCGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAc < 1:3237845/150‑1 (MQ=255) gTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCgg < 1:2093710/150‑1 (MQ=255) tGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGc < 2:4626849/150‑1 (MQ=255) tGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGc < 1:2458713/150‑1 (MQ=255) ccTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCct < 1:6434780/150‑1 (MQ=255) cTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCctc > 1:6657531/1‑150 (MQ=255) cTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCctc > 2:781953/1‑150 (MQ=255) tACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCctct > 2:2759147/1‑150 (MQ=255) aCGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCtt < 2:3405345/150‑1 (MQ=255) cGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTc < 1:3538004/150‑1 (MQ=255) cGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTc > 2:1331062/1‑150 (MQ=255) cGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTc > 2:4397714/1‑150 (MQ=255) cGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTc > 2:4397700/1‑150 (MQ=255) aCTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTcgc < 1:5496582/150‑1 (MQ=255) cTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTcgcg > 2:948722/1‑150 (MQ=255) cTTCGGCTACAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTcgcg > 2:3384505/1‑150 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCTCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg > 2:6781740/1‑150 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 1:1976623/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 1:29662/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 1:661959/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 2:3219893/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 1:6729093/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 2:5868678/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 2:515851/150‑1 (MQ=255) tCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCggg < 1:3198764/150‑1 (MQ=255) tCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCggg < 1:21541/150‑1 (MQ=255) gCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGtca < 1:5225263/150‑3 (MQ=255) gCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGa > 2:572165/1‑150 (MQ=255) ttCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAc < 1:1835076/150‑1 (MQ=255) ttCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCATGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTAGCGGGTGGAc > 1:1678102/1‑150 (MQ=255) ttCAGTGACAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAGATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAc > 2:3135881/1‑150 (MQ=255) tCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAcc < 2:6472809/150‑1 (MQ=255) gTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGc < 2:1547256/150‑1 (MQ=255) gTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGc < 2:2460896/150‑1 (MQ=255) gTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGc < 2:1547265/150‑1 (MQ=255) gCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTc < 1:2918748/150‑1 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGcgaaga < 1:4714058/150‑6 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTa < 1:3673022/150‑1 (MQ=255) gCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAc < 1:573917/150‑1 (MQ=255) cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACa < 2:677999/150‑1 (MQ=255) cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACa < 2:6054701/150‑1 (MQ=255) aaGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAg < 2:3511045/150‑1 (MQ=255) gCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGtt > 2:4447233/1‑150 (MQ=255) ccAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTa < 1:1723430/150‑1 (MQ=255) cAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAg < 1:2327890/150‑1 (MQ=255) cAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAg < 1:3630706/150‑1 (MQ=255) gCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGa < 1:4933030/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:4782398/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:1104109/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:1103876/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:4240601/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCATGGCGGGGGTGACCGCACCCACACGGTGCGCGGGAggggagg > 1:3619187/1‑145 (MQ=255) gCAGCGCTGCGTCAGTCGGGGAGTCGCTAAGCTGAAATCACTGAACGCCGTGTGCTCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:4782626/150‑1 (MQ=255) gCAGCGCTGCGTCAGGCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGGTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGGTTCCGCGGTAGGAGCgg < 2:6112953/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:5690703/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:5690755/150‑1 (MQ=255) cAGCGCTGCGTCAGGCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑CACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 2:5778476/150‑1 (MQ=255) gcgcTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTc < 1:2509585/133‑1 (MQ=255) gcgcTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTc > 2:2509585/1‑133 (MQ=255) gTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCcgc < 2:3466749/150‑1 (MQ=255) gggTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑ACCGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGTTTCAGCGGTAGGAGCGGGTTCACCCGCGAAGAgg < 2:1585794/150‑1 (MQ=255) gggTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGACCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTCCCGGTTCAGCGGTAGGAGCGGGTTCACCCGCGAAGAgg < 2:1585752/150‑1 (MQ=255) cTACGCTGAAATCACTGACCGCCTTGTGAGCCCCAG‑AACGCCCCGGCTCGCGGGGGCGTTTCTATTTCCTGACCCGCCCTCTTCGGGGGTTAACCCGCTCAAACCGGTTCGGGGGTAGGAGGGGTTTCACCCGCGAAGAGGCCGggcaag < 2:2402358/150‑1 (MQ=255) tAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGTACCCCCGCCAACACGGTCCCCGGGGGGAGCGGGGTCACCCCCGGACAGGCCGggccagg > 2:3225874/1‑150 (MQ=255) tAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGTAACCGCGCCAGCAGGTTGCGCGGGAGGAGCGGGTTCACCCGCGAAGAGGCCGggcaagg > 2:3225923/1‑150 (MQ=255) cggAACCCGGTGTGACCCCCAG‑CACCCCCCGGCTCGCGGGGGCGTTTCTATTCCCTGCCCCGGCCTCTTCGCGGGTCAACCCGCTCCTACCGGTTCCGGGGTAGGCGGGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct < 2:1314175/148‑1 (MQ=25) cTGACCGCCGTGTGACCCCCCC‑AACCCCCGGGCCCGCCGGGGCTTTAATATTTCCGCCCCCGGCCTCTTCGCGGGTCACCCCGCGCCTACCGGTCCCGGGGTTGGAGCGGTTGCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct < 2:1315000/150‑1 (MQ=255) aaCGCGGTTGGAGCCCCCG‑ACCGCCCGGGCTCGCCGGGGCTTTTCTATTCCCTGACCCGGCCCCTGCGCGGGTTAACCCGCTCCTACCGGTACGGCGGTTGGAGGGGGTACACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGaa < 1:3384505/150‑1 (MQ=255) aaCGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGTTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGaa < 2:2726258/150‑1 (MQ=255) tgtgATCCCCAG‑ACCGCCCCGGCTCGCGGGGGCGTTTATATTTCCTGACCCGGCCTCTTCGGGGGTTAACCCGCTCCTACCGGTTCCGGGTTTGGAGGGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACctct < 1:6293274/150‑1 (MQ=38) gtgATCCCCAG‑ACCGCCCCGGCGGGCCGGGGCTTTTCTTTTTCCTGACCCGGCCTCTTCGCGGTTGAACCCGCTCCTACCGGTTCCGCGGTAGGTGCGGTTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCtctc < 2:984221/150‑1 (MQ=255) ccAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTAGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCAACCGCGAAGAGGCCGGGCAAGGCAATCAAACTACTGAATACCTCTACAAAacc > 2:2718256/1‑150 (MQ=38) tagaaaCGCCCCGGCGAGCCGGGGCG‑TTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCCCTCCTACAGGGTGCGCGGGAGGCGCGGGTTCACCCCCGTAGAGGCCGGGCCAGGCAAACAACCACCGGAATAACGCTCCAAAcccc > 2:5434207/5‑150 (MQ=21) cAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACa < 1:3340491/72‑1 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGGAACCCCGCCAACAGGGTGCGCGGTAGGAGCGGGGTCACCCCCCAACAGGCCGGGCCAGGCCAACAACCGCCAGAAAAACACACCAAAACCCCCCCCCaac > 2:1281280/1‑148 (MQ=255) | GGCCCTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGC > NC_002947/883660‑883953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |