BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	939,935	C→G	7.0%	G1897A (GGC→GCC)	PP_0806 ←	surface adhesion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	939,935	0	C	G	7.0%	683.0 / 28.0	247	G1897A (GGC→GCC)	PP_0806	surface adhesion protein
Reads supporting (aligned to +/- strand): ref base C (96/133); new base G (13/5); total (109/138)
Fisher's exact test for biased strand distribution p-value = 1.46e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 261 total aligned reads displayed.

GTTGCCTGCCGCATCGGTGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCCAGCAGTTCG  >  NC_002947/939787‑940084

     ctgccGCATCGGTGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGtt                                                                                                                                                 <  1:1394479/150‑1 (MQ=255)

      tgccGCATCGGTGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGTTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGGCAGCAC‑CGTACGCGTGCTGGCCgccga                                                                                                                                                <  1:6013561/150‑5 (MQ=14)

        ccGCATCGGTGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCCCCCGGACC‑GTGCTGCCCCGTTCgg                                                                                                                                              >  1:4221850/1‑150 (MQ=14)

            aTCGGTGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGcgcg                                                                                                                                          <  2:4922660/150‑1 (MQ=255)

                 tGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCgg                                                                                                                                     <  2:2491642/150‑1 (MQ=255)

                 tGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCgg                                                                                                                                     <  1:5915552/150‑1 (MQ=255)

                 tGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCgg                                                                                                                                     <  2:4740504/150‑1 (MQ=255)

                 tGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCACCACCCCGAAC‑GTGCTGCCCCGTTCGGCGCGGcccg                                                                                                                                     >  1:5428299/1‑148 (MQ=14)

                    ccGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCACCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGGGa                                                                                                                                  >  1:1044409/1‑150 (MQ=255)

                     cGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCACGCCTACG‑GTGCTGCCCCGTTCGGCGCGGCCGGTgtc                                                                                                                                 >  1:5509237/1‑148 (MQ=255)

                       tGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCACCCGTACG‑GTGCGGCCCCGGGCGGCGCGGCCCGGGAccc                                                                                                                               >  1:4842789/1‑149 (MQ=14)

                        gACTTGGAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCAc                                                                                                                              <  2:2077551/150‑1 (MQ=255)

                           ttGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCt                                                                                                                           <  2:1958602/150‑1 (MQ=255)

                           ttGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGGACG‑GTGCTGCCCGGTTCGGCGCGGCCCGTGACCAcccg                                                                                                                           >  2:2577825/1‑147 (MQ=255)

                              aaGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGcc                                                                                                                        <  1:2587535/150‑1 (MQ=40)

                              aaGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCGACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGcc                                                                                                                        <  2:5735648/150‑1 (MQ=255)

                                  aCCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCg                                                                                                                    <  1:4413539/150‑1 (MQ=39)

                                     tCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTTCG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGGCGGCa                                                                                                                 >  2:1005426/1‑150 (MQ=255)

                                     tCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACCCGTACG‑GTGCGGCCCGGTTCGGCGCGGCCGGTGACCACCCGGCCGGCGGCa                                                                                                                 >  1:2152895/1‑150 (MQ=11)

                                      cGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCAt                                                                                                                <  1:3153515/150‑1 (MQ=35)

                                      cGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCAt                                                                                                                <  2:113627/150‑1 (MQ=35)

                                           tCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATc                                                                                                           <  1:1743733/150‑1 (MQ=34)

                                             tATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCAc                                                                                                         <  1:4917538/150‑1 (MQ=34)

                                             tATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCAc                                                                                                         <  1:1859654/150‑1 (MQ=34)

                                              aTCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGGGGGCAGCACGCCGACG‑GGGCTGCCCGGTGGGGCCCGGCCCGTGGCCACCCGGCCGTCGGCAGTGGTAAcc                                                                                                        >  1:1497989/1‑150 (MQ=11)

                                               tCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCa                                                                                                       <  2:3473782/150‑1 (MQ=34)

                                                     gCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCACCCCTACC‑GTGCTGCCCCGGTCGGCGCCGCCCGTGACCACCCTGCCCGCGGCAGTGATCCCCACTtcgg                                                                                                 >  2:2407304/1‑150 (MQ=11)

                                                      cGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTtcggt                                                                                                <  1:276796/150‑1 (MQ=34)

                                                      cGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTtcggt                                                                                                <  2:5044707/150‑1 (MQ=34)

                                                        ggTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTtcggtcg                                                                                              <  1:5950013/150‑1 (MQ=34)

                                                        ggTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTtcggtcg                                                                                              <  1:5859239/150‑1 (MQ=34)

                                                          tCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTcggtcggt                                                                                            <  2:4378257/150‑1 (MQ=34)

                                                          tCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTcggtcggt                                                                                            <  2:3441615/150‑1 (MQ=34)

                                                            gAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGc                                                                                          <  2:1813034/150‑1 (MQ=34)

                                                            gAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGc                                                                                          <  2:4516836/150‑1 (MQ=34)

                                                               ggTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCACGCGTACG‑GTGCTGCCCCGTTTGGCGCGGCCGGGGACCACCCAGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGc                                                                                       >  2:717378/1‑150 (MQ=11)

                                                               ggTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGGACG‑GTGCTGCCCGGGTCGGCGCGGCCGGGGGCCACCCAGCCGGCGGCATTTATGACCACTTCGGTCGGTGGGGc                                                                                       >  1:1401929/1‑150 (MQ=11)

                                                                    tGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCCCTTCGGTCGGTGCGGCAgggg                                                                                  >  1:6819064/1‑150 (MQ=21)

                                                                      cTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCg                                                                                >  2:1609610/1‑150 (MQ=21)

                                                                       tGAAGCTGCCGGTAGCGCCATCTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCgg                                                                               <  1:3391142/150‑1 (MQ=21)

                                                                       tGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGGGGCCAGCCCGCGGACG‑GTGCTGCCCCGGTGGGCGCGGCCCGGGACCACCCGGCCCTCCGCCGTGATAAACCCGTAGGTCGGGGGGGCAGGGGCgg                                                                               >  1:3592308/1‑150 (MQ=2)

                                                                       tGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCgg                                                                               <  1:5686603/150‑1 (MQ=34)

                                                                       tGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCgg                                                                               <  2:6022956/150‑1 (MQ=34)

                                                                       tGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGGTCGGCGCGGGCGGTGACCCCGCGGCCGGCGGCAGTGTTCACCAGTTCGGTCGGGGCGGCGGGGGCgg                                                                               >  1:1024111/1‑150 (MQ=11)

                                                                        gAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCCCCCGGACG‑GGGCGGCCCGGGTCGGCGCGGCCCGGGCCCACCCCGCCGGCGGCCGTGATCCCCCGGTCGGGCGGGGCGGCCGGGGCggg                                                                              >  1:460233/1‑149 (MQ=2)

                                                                        gAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGt                                                                              <  1:2547845/150‑1 (MQ=34)

                                                                           gCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGat                                                                           <  1:2936864/150‑1 (MQ=34)

                                                                              gCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATc                                                                        >  2:1544647/1‑150 (MQ=34)

                                                                              gCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGGGCCCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATc                                                                        >  2:2198013/1‑150 (MQ=21)

                                                                                  gTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGGACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGGCGGCATTGATCACCAGGTCGGTCGGGGCGGCAGGGGCGGTGATATCcggg                                                                    >  2:3928991/1‑149 (MQ=255)

                                                                                    aGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCcggtgc                                                                  <  2:6843099/150‑1 (MQ=34)

                                                                                     gcgcCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCcggtgcg                                                                 <  1:4138838/150‑1 (MQ=34)

                                                                                     gcgcCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCCTACG‑GTGCTGCCCGGGTCGGCGCGGCCGGTGACCACGCAGCCGGCGGCCTTGATCACCAGTGCGGTCGGGGCGGCAGGGGCGGTGATATCcggtgcg                                                                 >  1:2165874/1‑150 (MQ=11)

                                                                                      cgcCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCcggtgcgg                                                                <  1:5154359/150‑1 (MQ=34)

                                                                                       gcCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGcc                                                                                                                                                      >  2:882478/1‑63 (MQ=35)

                                                                                       gcCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGcc                                                                                                                                                      <  1:882478/63‑1 (MQ=35)

                                                                                        ccAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACCCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACCCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATAcggtgcggtg                                                              >  1:5642368/1‑150 (MQ=255)

                                                                                         cAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGa                                                             <  2:6456386/150‑1 (MQ=34)

                                                                                         cAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGa                                                             <  2:5326082/150‑1 (MQ=34)

                                                                                          aaCTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGGCAGCGCGCGTACG‑GTGGTGGCCGGTTGGGGGCGGCCGGTGACCACGCTGCCGTGGGCAATGATAACCAGTTAGGTGGGTGCGGCAGGGGCGGTGATATACGGTTCGGTGAt                                                            >  2:1377774/1‑150 (MQ=11)

                                                                                            cTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGAttt                                                          <  2:5499260/150‑1 (MQ=34)

                                                                                             tATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCCCGCGGGCG‑GTGCTGGCCGGTTCGGCGCGGCCGGTGGCCACGCTGCCGGCGGCCTTGATCACCAGTTCGGTCGGGGCGGCCGGGGCGGGGGGATCcggggcggggggttg                                                         >  2:2285876/1‑143 (MQ=11)

                                                                                             tATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCg                                                                                                                                      <  1:3826373/73‑1 (MQ=39)

                                                                                             tATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGGGATATCcggtgcggtgggttg                                                         >  2:3812768/1‑145 (MQ=19)

                                                                                              aTCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgg                                                        <  2:6494367/150‑1 (MQ=33)

                                                                                              aTCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgg                                                        <  2:3614733/150‑1 (MQ=33)

                                                                                              aTCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgg                                                        <  2:6594127/150‑1 (MQ=33)

                                                                                                 aCGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCAGTGATCACCAGTTCGGTCGGGGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgggtg                                                     >  2:6208184/1‑150 (MQ=17)

                                                                                                 aCGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGGTCGGCGCGGCCGGGGACCACGCGGCCGTCGGCATTGATCACCAGTTCGGGCGGGGCGGCAGGGGCGGTGGTATCCGGTGCGGTGATTtgggtg                                                     >  1:3920488/1‑150 (MQ=11)

                                                                                                  cGCTACCCAGCACAGTGGTGCCGTCGGCGGCCCGCCCGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCACTTCGGTCGGTGCGGCAGGGGCGGGGATATACGGTGCGGTGATTtgggtgg                                                    >  1:2817910/1‑150 (MQ=11)

                                                                                                  cGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgggtgg                                                    <  2:5105364/150‑1 (MQ=32)

                                                                                                  cGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgggtgg                                                    <  2:3308710/150‑1 (MQ=32)

                                                                                                  cGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCCGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTAGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTtgggtgg                                                    >  2:5967648/1‑150 (MQ=17)

                                                                                                         cAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGa                                             <  1:996787/150‑1 (MQ=32)

                                                                                                          aGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGTTATCCGGTGCGGTGATTTGGGTGGGCAGCGAg                                            >  1:6872559/1‑150 (MQ=17)

                                                                                                          aGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAg                                            <  2:5177542/150‑1 (MQ=32)

                                                                                                            cacaGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCGCGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGa                                          <  1:2903898/150‑1 (MQ=17)

                                                                                                            cacaGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGa                                          <  2:4812079/150‑1 (MQ=32)

                                                                                                                gtggtgCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAaca                                      <  1:5140548/150‑1 (MQ=32)

                                                                                                                    tgCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACAccgc                                  <  2:3866424/150‑1 (MQ=32)

                                                                                                                     gCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACAccgcc                                 <  2:1156357/150‑1 (MQ=32)

                                                                                                                      ccGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACAccgcca                                <  2:4343475/150‑2 (MQ=17)

                                                                                                                        gTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGtc                              <  2:5635793/150‑1 (MQ=32)

                                                                                                                           ggcggcCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGtcatc                           >  1:6282556/1‑150 (MQ=32)

                                                                                                                             cgggCAGCAC‑CGTACGCGTGCTGGCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCaa                         >  1:667581/1‑150 (MQ=11)

                                                                                                                              gggcAGCAC‑CGTACGCGTGCTGGCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAAt                        >  1:2485543/4‑150 (MQ=11)

                                                                                                                               gcCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATg                       <  1:4324517/150‑1 (MQ=32)

                                                                                                                                gcAGCAC‑CGTACGCGTGCTGGCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAgg                                           >  2:3230190/2‑129 (MQ=11)

                                                                                                                                 cAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGc                     >  2:3879611/1‑150 (MQ=32)

                                                                                                                                 cAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGc                     >  1:4033645/1‑150 (MQ=32)

                                                                                                                                 cAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGc                     >  2:2181625/1‑150 (MQ=32)

                                                                                                                                    cACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGccac                  <  2:2855161/150‑1 (MQ=32)

                                                                                                                                       gcgTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCcaccac               >  1:2349115/1‑150 (MQ=32)

                                                                                                                                            cG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCca          <  1:5566733/150‑1 (MQ=32)

                                                                                                                                             g‑gTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCcag         <  1:476662/150‑1 (MQ=32)

                                                                                                                                             g‑gTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCcag         >  1:6455311/1‑150 (MQ=32)

                                                                                                                                                tgctgcCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCcagca       >  2:294168/1‑150 (MQ=32)

                                                                                                                                                   tgcCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCCAGCAGtt    <  1:3154047/150‑1 (MQ=32)

                                                                                                                                                     cccGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCCAGCAGTTCg  >  1:5054723/1‑150 (MQ=32)

                                                                                                                                                     cccGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCCAGCAGTTCg  >  1:779777/1‑150 (MQ=32)

GTTGCCTGCCGCATCGGTGGCCGTGACTTGAAGCACCTCGCCGTCTATCTGTGGCGGGTCGAGGGTGATGCTGAAGCTGCCGGTAGCGCCAACTATCACGCTACCCAGCACAGTGGTGCCGTCGGCGGCCAGCACGCGTACG‑GTGCTGCCCGGTTCGGCGCGGCCGGTGACCACGCTGCCGTCGGCATTGATCACCAGTTCGGTCGGTGCGGCAGGGGCGGTGATATCCGGTGCGGTGATTTGGGTGGGCAGCGAGGAAACACCGCCGTCATCAATGGCCACCACGTCCAGCAGTTCG  >  NC_002947/939787‑940084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`