| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,397,870 | T→C | 17.5% | intergenic (+85/‑101) | PP_1214 → / → ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,397,870 | 0 | T | C | 17.5% | 435.2 / 71.9 | 181 | intergenic (+85/‑101) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Reads supporting (aligned to +/- strand): ref base T (64/82); new base C (22/9); total (90/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.35e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.33e-01 | |||||||||||
Only 100 of 186 total aligned reads displayed.
CGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATG > NC_002947/1397722‑1398019 | cgacgTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTCTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTAtt < 1:3769002/150‑1 (MQ=255) gacgTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑a < 1:6782968/150‑1 (MQ=255) cgTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACg < 1:3774863/150‑1 (MQ=255) cgTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACg < 2:2760760/150‑1 (MQ=255) tGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGcc < 2:2841657/150‑1 (MQ=255) tGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGGAACCCGCGCCTACAGGTCTT‑ACGcc > 1:6831517/1‑150 (MQ=255) cAGAACGTCTATTCCAAGGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑Ca < 2:4004420/150‑1 (MQ=255) aGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CAt < 1:1205580/150‑1 (MQ=255) aGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGATAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCAACCGGGATT‑AAGCC‑CAt > 1:4560889/1‑150 (MQ=39) aaCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CAttt < 2:258130/150‑1 (MQ=255) aCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTc < 2:2825572/150‑1 (MQ=255) gTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCaa < 1:922531/150‑1 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑At < 1:5165635/150‑1 (MQ=255) tATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGAGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGTATT‑ACGCC‑CCTTTCAA‑Atg > 2:5541668/1‑150 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑Atgtg < 1:1494570/150‑1 (MQ=255) tCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGAGTTTGATAGCGCCTGTGCCGGCCCTTTAGCGGGTAAAACCCCTCCGACAGGTATT‑AAGCA‑CCATTAAA‑ATgtgg > 2:2414872/1‑150 (MQ=255) ccAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATgtggt < 1:4843750/150‑1 (MQ=255) ccAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATgtggt < 2:4523831/150‑1 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATgtggtg < 1:248728/150‑1 (MQ=255) cAATGCCCAGATTTACGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATgtggtg < 2:4627166/150‑1 (MQ=255) aaTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGc < 2:3276840/150‑1 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCa < 1:6728393/150‑1 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCa < 2:2023201/150‑1 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTAc > 2:2707158/1‑150 (MQ=255) cAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAATACCGCGCCAACAGGGATT‑TCGCC‑CATTTCAA‑ATTGGGTGGAggtcc > 1:2235927/1‑146 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCt < 2:382811/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCt < 2:4456657/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCt < 1:4575035/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGGATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTAGCt > 2:3531789/1‑150 (MQ=255) gATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTg < 2:2462064/150‑1 (MQ=255) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGt < 2:6190019/150‑1 (MQ=255) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGt < 1:5600757/150‑1 (MQ=21) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGt < 1:2318609/150‑1 (MQ=21) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGt < 1:631382/150‑1 (MQ=21) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTa < 1:3391974/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTa < 1:6566547/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTa < 2:6511708/150‑1 (MQ=21) tgtCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTa < 2:4857895/148‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAg < 1:1610371/150‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAg < 1:2552969/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGa < 2:5883405/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGa < 2:5266483/150‑1 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGc < 2:5318170/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCgg < 1:544246/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCggg < 1:6117927/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTATT‑ACGCC‑CAATTAAA‑ATGTTGTGCAGGAACGGTAGGAGCggg > 2:140582/1‑150 (MQ=255) agaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGt < 1:5436084/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTAc < 1:1289807/150‑1 (MQ=17) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTAGCCGGTAAACCCCCGCCGAAAGGTGGA‑AAGCC‑CCTTTGAA‑AAGTTGGGCAGTAACGGTCGGAGGGGGTTGAca > 1:3883537/1‑149 (MQ=255) tGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTAGCCGGTTAAACCCCACCAACAAGTATT‑TAGCC‑CAATAAAA‑AAGTGGTTCAGTAACAGTATGACCGGGGTTAcac > 1:4466282/1‑148 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCcgc < 1:5171125/150‑1 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCcgc < 2:6020216/150‑1 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGGATT‑ACGCC‑CAATTCAA‑ATGTGGGGCACTACCGGTAGGCGCGGGGTTACCcgc > 2:6465400/1‑150 (MQ=38) aaaaCCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTACGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCcgcg < 2:5161397/150‑1 (MQ=255) cTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGAAAACCCCACCAACAGGTATT‑AAGCC‑CAATTAAA‑AATTGGTGGAGTAACAGTAGGAGGGGGTTTAACCCCGAAAgg > 2:216862/1‑150 (MQ=255) tCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGGAAGCCCCGCCGACAGGGATT‑AAGCC‑CCGTTAAA‑AAGTGGTGCACTAACGGGTGGGGCGGGTTTACCCGCGAAAggg > 1:6812946/1‑150 (MQ=255) ttGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑AAGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGGGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGTTGt > 2:3974293/1‑150 (MQ=255) ttttGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCCCACCAACAGGGAAT‑AAGCC‑CAATTAAA‑ATTGGGTGGAGTACCAGTTGGGGCGGGGGTAACCCCGAAAGGGCCCGCCCAGTTTggtgtgat > 2:2882750/1‑143 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGAAACCCCCGCCAACAAGGATTAACCCC‑CATTAAAA‑AT‑TGGTGCAGTAACGGTGGGAGCGGGGTTAACCCCCAAAGGGCCGGCGCCCGTTGTTGAGATGCAGCAtt > 2:720432/1‑150 (MQ=255) aCTCTGAGCGTTTGATCGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCGCCTACAGGGAAT‑ACCCC‑CAGTTCAA‑ATGTGGTGCACTACCAGTAGGTGCCGGGTTACCCCCGAAACGGCCGGCGCCGTTTGTAGAGATGCCTCAattt > 2:5468406/1‑150 (MQ=255) tGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCCCTCCAACAGGTATT‑ACGCC‑CCGTTGAA‑ATTTGGTGGAGTAACGGTAGGGGCCGGTTTACCCGCGCAAGGGCCGGCGCAGGTTGTTGAGATGCATGAatttttag > 2:4800674/1‑148 (MQ=255) gTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CTTTTCAA‑TTGTGGTGCAGTACCTGTTGGCGCGGTTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACggg < 2:1037973/150‑1 (MQ=38) gcgcCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACCGGTATT‑AAGCC‑CAATTCAA‑AAGTGGTGCAGTACCGGTAGGAGCGGGTTTAACCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGGATTATGa > 2:3907904/1‑150 (MQ=37) cgcCTGGGCCGGCCCTTTCGTGTGAAACCCCGCTCCCACCGTTATT‑ACGCC‑ATTTTCAATTTGTGG‑GCTGTAGGTGTTGGTGGGTTTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGAc < 2:4184519/150‑1 (MQ=255) cTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGGGCAGTACCTGTAGGAGCGGGTTTACCCGCGCAAGGGCCGGCGCAGGTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTa > 2:5996285/1‑150 (MQ=255) tttCGCGGGTAAACCCGCTCCTACAGGTATT‑AACCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGTTGTAGAGATGCATCATTTTTTAGAAGGGCGTTATGACTCTGATTATAGGTAt > 1:431498/1‑150 (MQ=25) ttCGCGGGTAAACCCGCTCCTACTGGTATT‑ACGCC‑CTTTTCAA‑TTGTGGTGCAGTACCTGTTGGCGGGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATc < 2:6831517/150‑1 (MQ=38) ggTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAcccc > 1:3473821/1‑150 (MQ=255) aaCCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTGTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCt > 1:2127809/1‑150 (MQ=255) ccGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:4103863/1‑150 (MQ=255) ccGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:5870752/1‑150 (MQ=255) ccGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:4667504/1‑150 (MQ=17) ccGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTGGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 2:3443939/1‑150 (MQ=18) gCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCgcgc > 1:3984066/1‑150 (MQ=255) tCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:826251/1‑150 (MQ=255) tCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGACAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 1:6002531/1‑150 (MQ=18) tCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 1:5314115/1‑150 (MQ=18) tCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:1663180/1‑150 (MQ=18) tCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:2236148/1‑150 (MQ=18) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:1882469/1‑150 (MQ=255) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:1278082/1‑150 (MQ=255) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4701869/1‑150 (MQ=255) cTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:6745984/1‑150 (MQ=18) cTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4283052/1‑150 (MQ=18) cTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:3082291/1‑150 (MQ=18) cTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:1532731/1‑150 (MQ=18) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3173809/1‑150 (MQ=255) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:5503756/1‑150 (MQ=255) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:6389840/1‑150 (MQ=255) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:6234590/1‑150 (MQ=255) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:3178621/1‑150 (MQ=255) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:1198156/1‑150 (MQ=21) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:6317761/1‑150 (MQ=21) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:6390898/1‑150 (MQ=21) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:4977791/1‑150 (MQ=21) aCAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 2:2097964/1‑150 (MQ=255) cAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCg > 2:2892553/1‑150 (MQ=255) aGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:1833665/1‑150 (MQ=255) ggTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGc > 2:6737572/1‑150 (MQ=255) tt‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATg > 2:5747005/1‑150 (MQ=255) | CGACGTGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATG > NC_002947/1397722‑1398019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |