| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,397,895 | G→A | 17.3% | intergenic (+110/‑76) | PP_1214 → / → ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,397,895 | 0 | G | A | 17.3% | 433.6 / 71.9 | 190 | intergenic (+110/‑76) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Reads supporting (aligned to +/- strand): ref base G (102/49); new base A (23/8); total (128/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.46e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
TGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGG > NC_002947/1397746‑1398044 | tGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAg < 2:1709712/150‑1 (MQ=255) cAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAATACCGCGCCAACAGGGATT‑TCGCC‑CATTTCAA‑ATTGGGTGGAggtcc > 1:2235927/1‑146 (MQ=255) cAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTAcc < 1:4891696/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCt < 1:4575035/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCt < 2:382811/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGGATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTAGCt > 2:3531789/1‑150 (MQ=255) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTTGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGt < 1:6747903/150‑1 (MQ=255) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGt < 1:2318609/150‑1 (MQ=21) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTa < 1:6566547/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTa < 2:6511708/150‑1 (MQ=21) tgtCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTa < 2:4857895/148‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAg < 1:1610371/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGa < 2:5883405/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGa < 2:5266483/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGa < 1:3561931/150‑1 (MQ=255) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGc < 2:5318170/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCgg < 2:2753982/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCgg < 1:544246/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCggg < 1:6118193/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTATT‑ACGCC‑CAATTAAA‑ATGTTGTGCAGGAACGGTAGGAGCggg > 2:140582/1‑150 (MQ=255) agaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGt < 2:2398604/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑Ac < 2:3701724/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑Ac < 1:1289807/150‑1 (MQ=17) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTAGCCGGTAAACCCCCGCCGAAAGGTGGA‑AAGCC‑CCTTTGAA‑AAGTTGGGCAGTAACGGTCGGAGGGGGTTG‑‑Aca > 1:3883537/1‑149 (MQ=255) tGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑Accc < 1:6325113/150‑1 (MQ=255) tGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTAGCCGGTTAAACCCCACCAACAAGTATT‑TAGCC‑CAATAAAA‑AAGTGGTTCAGTAACAGTATGACCGGGGTT‑‑Acac > 1:4466282/1‑148 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACCGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCcgc < 1:5171248/150‑1 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCcgc < 2:6020190/150‑1 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGGATT‑ACGCC‑CAATTCAA‑ATGTGGGGCACTACCGGTAGGCGCGGGGTT‑‑ACCcgc > 2:6465400/1‑150 (MQ=38) aaaaCCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTACGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCcgcg < 2:5161397/150‑1 (MQ=255) cTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGAAAACCCCACCAACAGGTATT‑AAGCC‑CAATTAAA‑AATTGGTGGAGTAACAGTAGGAGGGGGTTT‑‑AACCCCGAAAgg > 2:216862/1‑150 (MQ=255) tttttGTCCAAACTCTGTGAGTTTGATCGCGCCTGTGCGGGCCCTTTCGCGGGAAAACCCGCTCATACAGGTTTT‑ACGCC‑CATTAAAA‑ATGTGGTGCAGTACCTGTCGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAgaga < 2:4508184/149‑1 (MQ=25) aTTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGTATT‑ACGCC‑CATTTAAA‑ATGGGGTGCAGTACCAGTAGGAGCGGGTTT‑‑ACCCGCCAAAGGGCCGGCGCCGTTTGTAgaga > 2:2827153/1‑150 (MQ=37) ttttGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCCCACCAACAGGGAAT‑AAGCC‑CAATTAAA‑ATTGGGTGGAGTACCAGTTGGGGCGGGGGT‑‑AACCCCGAAAGGGCCCGCCCAGTTTggtgtgat > 2:2882750/1‑143 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGt > 2:2495179/1‑97 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGt < 1:2495179/97‑1 (MQ=255) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGGAAACCCCCGCCAACAAGGATTAACCCC‑CATTAAAA‑AT‑TGGTGCAGTAACGGTGGGAGCGGGGTT‑‑AACCCCCAAAGGGCCGGCGCCCGTTGTTGAGATGCAGCAtt > 2:720432/1‑150 (MQ=255) aCTCTGAGCGTTTGATCGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCGCCTACAGGGAAT‑ACCCC‑CAGTTCAA‑ATGTGGTGCACTACCAGTAGGTGCCGGGTT‑‑ACCCCCGAAACGGCCGGCGCCGTTTGTAGAGATGCCTCAattt > 2:5468406/1‑150 (MQ=255) tGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCCCTCCAACAGGTATT‑ACGCC‑CCGTTGAA‑ATTTGGTGGAGTAACGGTAGGGGCCGGTTT‑‑ACCCGCGCAAGGGCCGGCGCAGGTTGTTGAGATGCATGAatttttag > 2:4800674/1‑148 (MQ=255) gTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CTTTTCAA‑TTGTGGTGCAGTACCTGTTGGCGCGGTTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACggg < 2:1037973/150‑1 (MQ=38) gTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCGCCTACAGGTATT‑AAGCC‑CATTTCAA‑ATGTTGTGCAGTAACTGTAGGAGCGGGTTT‑‑AACCGCGAAAGGGCCGGCGCAGGTTGTATAGATGCAAAATTTTTTAGACggg > 2:3303721/1‑150 (MQ=25) gcgcCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACCGGTATT‑AAGCC‑CAATTCAA‑AAGTGGTGCAGTACCGGTAGGAGCGGGTTT‑‑AACCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGGATTATGa > 2:3907904/1‑150 (MQ=37) cgcCTGGGCCGGCCCTTTCGTGTGAAACCCCGCTCCCACCGTTATT‑ACGCC‑ATTTTCAATTTGTGG‑GCTGTAGGTGTTGGTGGGTTTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGAc < 2:4184519/150‑1 (MQ=255) tttCGCGGGTAAACCCGCTCCTACAGGTATT‑AACCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGGTTGTAGAGATGCATCATTTTTTAGAAGGGCGTTATGACTCTGATTATAGGTAt > 1:431498/1‑150 (MQ=25) ttCGCGGGTAAACCCGCTCCTACTGGTATT‑ACGCC‑CTTTTCAA‑TTGTGGTGCAGTACCTGTTGGCGGGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATc < 2:6831517/150‑1 (MQ=38) aaCCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTGTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCt > 1:2127809/1‑150 (MQ=255) ccGCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:4667504/1‑150 (MQ=17) cGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgcg > 2:6176056/1‑150 (MQ=255) gCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCgcgc > 1:3984066/1‑150 (MQ=255) gCTCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCACAGTGTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCgcgc > 1:603342/1‑150 (MQ=17) tCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:826251/1‑150 (MQ=255) tCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:1663180/1‑150 (MQ=18) tCCTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCACAGGTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:5351687/1‑150 (MQ=17) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:1882469/1‑150 (MQ=255) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:1278082/1‑150 (MQ=255) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:3345518/1‑150 (MQ=255) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4701869/1‑150 (MQ=255) cTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:5826440/1‑150 (MQ=255) cTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:6745984/1‑150 (MQ=18) cTACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4283052/1‑150 (MQ=18) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:6389840/1‑150 (MQ=255) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3173809/1‑150 (MQ=255) tACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:3179116/1‑150 (MQ=255) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:1198156/1‑150 (MQ=21) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:4977791/1‑150 (MQ=21) tACAGGTACT‑GCACCACATTTGAA‑ATG‑GGCGTAATACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:6317736/1‑150 (MQ=21) aCAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 2:2097964/1‑150 (MQ=255) cAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCg > 2:2892553/1‑150 (MQ=255) aGGTATT‑ACGCC‑CATTTCAC‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 2:5726591/1‑150 (MQ=255) aGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:1833665/1‑150 (MQ=255) ggTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGc > 2:6737572/1‑150 (MQ=255) gTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 1:550240/1‑150 (MQ=255) gTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 1:3455929/1‑150 (MQ=255) ttccccc‑cTTTTCAT‑CTGTGGTGCCGGACGTGTAGGCGCGGGTTA‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATg < 1:2707158/145‑1 (MQ=255) cGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGAGTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCg > 1:627455/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:3040481/1‑150 (MQ=255) gCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:4448726/1‑150 (MQ=255) cc‑cATTTCAA‑TTGGGGGTCACTACCGGTTCG‑GCGGGTTTTCACCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt < 1:5360580/150‑1 (MQ=255) c‑cATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:1946557/1‑150 (MQ=255) c‑cATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:5010370/1‑150 (MQ=255) c‑cATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 2:5750094/1‑150 (MQ=255) c‑cATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 1:3371563/1‑150 (MQ=255) c‑cAGTTCAA‑ATGTGGAGCAGTACCTGGAGGAGCGGGTTT‑‑ACCCGCGAAAGGGACGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTATGATTCTAGGTCTCGACCCCGGCTCGCGCATCACAGGCTATGGCGTgg > 2:4601466/1‑150 (MQ=255) cATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGt > 2:1770306/1‑150 (MQ=255) cATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGt > 2:1541820/1‑150 (MQ=255) tttCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTAc > 1:1842829/1‑150 (MQ=255) tttCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTAc > 2:6668213/1‑150 (MQ=255) ttCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACg > 1:6859005/1‑150 (MQ=255) tCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCAGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGc > 1:5972125/1‑150 (MQ=255) aa‑aTGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa > 1:3425450/1‑150 (MQ=255) aa‑aTGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa > 1:1093482/1‑150 (MQ=255) aattgtgGTGCTTTACCTGTCGTCGGGTGTTT‑‑ACGGGCAAAGGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa < 1:1422950/147‑1 (MQ=255) aattgtgGTCCCTTACCTGGCGGCGCGTTTTC‑‑ACCCGCTAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCa < 1:5541668/147‑1 (MQ=255) ggtgCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGc > 2:3119300/1‑150 (MQ=255) gtgCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGcc > 1:2995020/1‑150 (MQ=255) gtgCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGcc > 1:4078048/1‑150 (MQ=255) ggccgTACGTGTCGGCGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGccc < 2:407825/146‑1 (MQ=255) gCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCg > 1:2571427/1‑150 (MQ=255) cAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGt > 1:1492699/1‑150 (MQ=255) gTACCTGTAGGAGCGGTTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTgg < 2:3950554/150‑1 (MQ=255) | TGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATT‑ACGCC‑CATTTCAA‑ATGTGGTGCAGTACCTGTAGGAGCGGGTTT‑‑ACCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCCAGACCGCCCGTGG > NC_002947/1397746‑1398044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |