| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,469,161 | A→C | 12.1% | P471P (CCT→CCG) | algX ← | alginate biosynthesis protein AlgX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,469,161 | 0 | A | C | 12.1% | 638.6 / 6.7 | 289 | P471P (CCT→CCG) | algX | alginate biosynthesis protein AlgX |
| Reads supporting (aligned to +/- strand): ref base A (150/74); new base C (4/41); total (154/135) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.69e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 298 total aligned reads displayed.
CTTTTCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGA > NC_002947/1469012‑1469310 | cTTTTCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCa < 2:2586264/150‑1 (MQ=255)cTTTTCGATCCCATGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCa < 1:1965385/150‑1 (MQ=255) ttttCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAg > 1:5409288/1‑150 (MQ=255) tttCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAgg > 2:5345637/1‑150 (MQ=255) tttCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAgg > 1:293349/1‑150 (MQ=255) tttCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAgg > 2:808114/1‑150 (MQ=255) ttCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGc > 1:3104560/1‑150 (MQ=255) ttCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGGGCGCGGCACCACCAAACACGGCCAA‑CGCGAGCAGGGCGGGGCGGGAGTTTCGTTTGAAAAGGGTCATGGGTGGCCTCTCTGGCC‑TGCCTGCGCGGTCTGCGCgggg > 2:4472568/1‑149 (MQ=255) tCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCAGACCGCGCAGGCa < 2:2096117/150‑1 (MQ=255) gATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCCGTGCCTGCGCAGACCGCGCAGGCag < 2:5334161/150‑2 (MQ=255) gATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACg > 2:342649/1‑150 (MQ=255) aTCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACAAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGTAATTTCTTTTGAAATGGGTCTTGGGTCGCCTCACTGGCG‑TGCCTGCGGGGTCTGCGCAGGCACgg < 2:3048515/150‑1 (MQ=255) ccccTGTTTGTAACCGTGCGGCGGTCCCCGCGGGGGGTGCGCGGCACCACCAAACAAGGCCAA‑GGCGAGCTGGGGGGGGGTGTAATTTCTTTTGAAATGGGTCTTGGTTCGCCTCAGTGGCG‑TGCGGGCGCGGTCGGCGCCGGCACGGCg < 2:3154171/150‑1 (MQ=255) cccTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGa > 2:3544011/1‑150 (MQ=255) ccTGGTAGTACCCCTGGGGCGGTCCCAGCGGGGCGGGCGCGGCACCACCAACCCCGCCCAC‑CGCGCGCTGGGGGGGGCTGGAATTTCGTTTGAAACGGGTCATGGGTCGCCTCACTGGCC‑GGCGTGCGCGGTGTGCGCAGGCACGGCGaa < 2:4910289/150‑1 (MQ=255) ccTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACACGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCG‑TGCCTGCGCAGACCGCGCAGGCaggccagt < 2:3581302/150‑8 (MQ=255) ccTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGaa > 1:3500413/1‑150 (MQ=255) cTGGTAGTAACCCTGCGGGGGTACCTGCGCGGCGTGCGCGGCACCACAAAACAAGGCCAA‑CGCGAGCTGGGGGGGGCTGGAATTTGTTTTTAAATGGGTAAGGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCTGGCACGGCGAAg < 2:6229646/150‑1 (MQ=255) cTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACAGGCC‑TGCCTGCGCGGTCGGCGCAGGCACGGCGAAg > 2:659843/1‑150 (MQ=255) tGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAgt > 1:796160/1‑150 (MQ=255) taACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGc > 2:4706256/1‑150 (MQ=255) aCCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGt > 1:1858559/1‑150 (MQ=255) ccTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGttt > 1:1044967/1‑150 (MQ=255) cggggggggTACCCGCGGGGGGGGCGGGGCACCACCAAACACGGCAAC‑CGCGTGCTGGGGGGGGGGGTAATTTGTTTTGAAATGGGTAATGGGTCGCCTC‑CGGGCCGTGCCGGGGGGGTCTGGCAAGGCACGGCGAAGTTGTTGCGTTTg < 2:3116325/143‑1 (MQ=255) ggcggggGTCCCCGGGGGGGGTGCGCGGCCCCCCCACCCCGGGCCAC‑CGCGCGCTGGGGGGGGCTGGAATTTCGTTTGAAACGGGGCTGGGGGCGCCTCCGGGGCC‑GGCGGGCGCGGGCGGCGCCGGCACGGCGAAGTTGTTGCGTTTGc < 2:6324296/149‑1 (MQ=255) gTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCtt > 1:1110992/1‑150 (MQ=255) tACCAGCGCGGCGTGCGCGGCACCACCAAACACGGCCAC‑CGCGTGCTGGGGGGGGCTGTAAATTCGTTTGAAATGGGTCTTGGGTCGCCTCACGGGCC‑TGCCTGCGCGGGCTGCGCTGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTg < 2:1662587/150‑1 (MQ=255) tACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTg > 1:6736265/1‑150 (MQ=255) tACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTGTGAACAGGGTCCTGGGTCGCCTCACTGGCC‑TGCCTCCGCGGGCTGCGCAGGCACGCCGAAGGTGTTGCGGTTGCAGAGCGTg > 2:1793137/1‑150 (MQ=255) cAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCt > 1:5472942/1‑150 (MQ=255) gcgcGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTc > 2:4220114/1‑150 (MQ=255) cggggcgTGCGCGGCACCACCAAACACCGCCAA‑CGCGAGCTGGGCGGGGGTGGAAATTCGTTTGAAAAGGGTCTTGGGTCGCCTCCGTGGCC‑TGCGTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCg < 2:6825127/147‑1 (MQ=255) cgcgGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCg > 1:916507/1‑150 (MQ=255) ggggcgTGCGCGCCACCACCAAACACGGCCAC‑CGCGAGCAGGGCGGGGCTGTAATTTCGTTTTAAATGGGTATTGGGTCGCATCAGTGGCC‑TGCCTGGGCGGTCGGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGa < 2:207613/148‑1 (MQ=255) cgTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCtt > 1:5966363/1‑150 (MQ=255) tGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCt > 1:4708637/1‑150 (MQ=255) ggcgcCACCACAAAACACGCCCAC‑CGCGCGCTGGGGGGGGCTGCAATTTCGTTTCAAATGGGTCTGGGGGCGCCTCAGTGGCC‑GGCCGGCGGGGTGGGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTgg < 1:4883396/149‑1 (MQ=255) gccaccacAAAACACGGCCAC‑CGCGACCTGGGCGGGGCTGCAAATTCTTTTCAAACGGGTCTGGGGCCGCCTCACGGCCC‑TGCCTGCGCGGTCTGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTg < 1:561976/148‑1 (MQ=255) caccacCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGAGCCGGCACGGCGAATTTGTTGCGTTTGCAGAGCATGGCTTCGAACTTCAGGGTGcc > 1:4023806/1‑150 (MQ=255) accaAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCtt > 1:5789885/1‑150 (MQ=255) accaAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCtt > 1:6289147/1‑150 (MQ=255) accaAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCGGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGGTTGCAGAGCTTGGCTTCGACCGTCTGGGTGCCGCtt > 1:4278403/1‑150 (MQ=255) ccaAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCttt > 2:5420936/1‑150 (MQ=255) ccaAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCGGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTAGCAGAGCTTGGCTTCGACCATCTGGGTGCCCCttt > 1:5668719/1‑150 (MQ=255) caAACACGGCCAC‑CGCGAGCTGGGGGGGGCTGTAATTTCGTTTGAAAAGGGTCAGGGGTCGCCCCACGGGCC‑GGCCTGCGGGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTc < 2:3765052/150‑1 (MQ=255) caAACACGCCCAA‑CGCGAGCCGGGGGGGGGTTTAATTTGTTTTTAAACGGTTCTTGGGTCGCCTCACTGGCC‑GGCGTGCGGGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTc < 2:1922991/150‑1 (MQ=255) caAAAAAGGCCAA‑CGCGAGCCGGGGGGGGCTGTAAATTCGTTTGAAAAGGGTCTTGGGTCGCCTCAGTGGCC‑GGCCTGCGCGGTCTGCCCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTc < 2:5261739/150‑1 (MQ=255) aaccacggCCAC‑CGCGCGCAGGGCGGGGCTGTAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTcc < 2:4543349/144‑1 (MQ=255) aaaccggCCAACCGCGTGCTGGGGGGGGTTGTAATTTGGTTTTAAATGGTACCTGGGCCGCCCCATGGGCC‑GGCGGGCGGGGTCGGCGCCGCCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTcc < 1:6645600/145‑1 (MQ=255) cgcccAC‑CGCGCGCTGGGGGGGTCTGTAATTTCTTTTCAAAGGGTTGCGGGGCCGCCTCCGGGGCG‑GGCCGGCGGGGGCGGCGCCGCCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGccc < 1:1288475/147‑1 (MQ=255) ccAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTg > 2:2451020/1‑150 (MQ=255) tccgcgcgCTGGGCGGGGCTGGAAATTGGTTTGAAATGGGTCATGGGGCGCCTCACTGGCC‑GGCCTGCGCGGTCTGCGCTGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTa < 2:6546802/148‑1 (MQ=255) a‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCAGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTAc > 1:3685144/1‑150 (MQ=255) cgcgAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCGGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCATCTGGGTGCCGCTTTCCGGCCCCAGTAca > 1:6546802/1‑149 (MQ=255) gggggggCTGTAAATTCGTTTTAAATGGTTCATGGGTCGCCTCACTGGCC‑GGCCTGCGCGCTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAAcgcg < 2:4027648/147‑1 (MQ=255) ggCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAAcgcg > 2:5965585/1‑150 (MQ=255) ggggggTTGTAAATTCTTTTTAAAAGGTTCTTGGGTCGCCTCACGGGCC‑TGCCTGCGCGGTCTGCGCTGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGa < 2:6652338/148‑1 (MQ=255) ggggggGTGTAATTTGGTTTGAATTGGGTCTGGGGTCGCCTCTGTGGCG‑TGCGTGCGGGGTCGGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGa < 1:558500/148‑1 (MQ=255) ggggggGTGGAAATGCGTTTGAACGGGGTCTGGGGTCGCCGCCCGGGCG‑GGCCGGCGCGGTCGGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGa < 2:6073263/148‑1 (MQ=255) gCGGGGCTGTAATTTCGTTTCAAATGGGTCAGGGGTCGCCTCACGGGCC‑TGCCTGCGCGGTCGGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGa < 1:2739175/150‑1 (MQ=255) gggggGTGTAATTTCGTTTTAAACGGGTCAGGGGTCGCCCCAGGGGCC‑GGCCTGCGCGGTCGGCGCCGCCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAg < 1:3959281/149‑1 (MQ=255) caaaTTGTTTTTAAACGGGTCTGGGGGCGCCCCCGGGGCG‑GGCCGGCGGGGGCTGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCgct < 1:5163524/149‑1 (MQ=255) atttCTTTTGAAATGGGTCATGGGTCGCCTCCGGGGCC‑GGCGGGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCgctgg < 2:1388482/148‑1 (MQ=255) tggTTTGAAACGGGTCCGGGGTCGCCTCCCGGGCC‑GCCCTGCGCGGGCCGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCgctggctg < 2:4761632/148‑1 (MQ=255) gTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCaggctggc > 2:517514/1‑150 (MQ=255) tttGAAAGGGGCCTTGGGGCCCCTCCGGGGCG‑GGCCGGCGCGGTCGGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGcc < 2:5834662/150‑1 (MQ=255) tttGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGcc > 1:6247284/1‑150 (MQ=255) tGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCa > 2:2849202/1‑150 (MQ=255) aatcgggTCAGGGGTCGCCCCCCGGGCC‑GGCCTGGGGGGTCTGCGCCGCCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGt < 1:239488/146‑1 (MQ=255) aaaaGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCAGTACCTCGAACGCGAGCAGGCGCTGGCTGGccccgg > 1:4363248/1‑147 (MQ=255) gggacttGGGTGGCCTCCGGGGCG‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTc < 2:5783223/144‑1 (MQ=255) gggTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTc < 2:2738978/150‑1 (MQ=255) gggTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTc < 2:1110992/150‑1 (MQ=255) gggTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTATGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCCGTCCTc > 2:791997/1‑150 (MQ=255) gTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGt > 2:1423955/1‑150 (MQ=255) tCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTc > 2:2505456/1‑150 (MQ=255) ttGGGTCGCCTCACGGGCC‑TGCCTGCGCGGCCTGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCtt < 2:4629047/149‑1 (MQ=255) aTGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCtt > 1:1640712/1‑150 (MQ=255) ggTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTgg < 2:5681547/83‑1 (MQ=255) tCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCACGCACGGCGAAGTTGTTGCGTTTTCAGAGCTTGGCTTCGACCTTATGGGTGCCGCTTTCCGGCCCCAGTAACTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTAgcgc > 1:150101/1‑150 (MQ=255) tCGCCTCACTGGCC‑TGCCGGCGCGGTCTGCGCAGGCACCGCGAAGTTGTTGCGTTTGCAGAGCTTGGCGTCGACCTGCTGGGTGCCGCGTTCCGGCCCCAGTAACTCGAACGCGAGCAGGCGCGGGCTGGCCCAGTCCTCGTCGTCgcgc > 1:133090/1‑150 (MQ=255) aCTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGa > 2:3263423/1‑150 (MQ=255) ctggcc‑tggcTGCGGGGTGTGCGCTGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGaa < 2:4832571/150‑1 (MQ=255) cTGGCG‑GGCCTGCGGGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGaa < 1:2522389/150‑1 (MQ=255) cTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGaa < 2:6452086/150‑1 (MQ=255) ggCC‑CGCCTGGGGGGTCTGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGa < 2:821123/150‑1 (MQ=255) cgtgcctgcGCAGACCGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTAGACCATCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAAACCGACCAGGCGCTGGCTGGCCCAGTCCTCGTCTTAGCGCCTATTGAAGACg > 2:296795/3‑150 (MQ=255) c‑tgcctgcGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGa > 2:5559468/1‑150 (MQ=255) tgcctgcGCGGTCTGCGCTGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGaa < 1:2107196/150‑1 (MQ=255) tgcctgcGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGac > 1:6094730/1‑149 (MQ=255) tgcctgcGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGaa > 1:2203736/1‑150 (MQ=255) tgcctgcGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGaa > 1:2705967/1‑150 (MQ=255) ctgcGCAGACCGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCg > 1:5296002/1‑150 (MQ=255) tgcGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGctggctgg < 1:2214693/112‑1 (MQ=255) tgcGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGctggctgg > 2:2214693/1‑112 (MQ=255) ccgcgtccTGCCCAGCCCCGGCGAAGCTGTTGCGTTGGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGc < 1:4472568/143‑1 (MQ=255) tCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCgg > 1:4964652/1‑150 (MQ=255) cTGCGCCGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGgt < 2:6131673/150‑1 (MQ=255) tGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGgtg > 1:4583399/1‑150 (MQ=255) aGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGa < 2:3631834/150‑1 (MQ=255) | CTTTTCGATCCCCTGGTAGTAACCCTGCGGCGGTACCAGCGCGGCGTGCGCGGCACCACCAAACAAGGCCAA‑CGCGAGCAGGGCGGGGCTGGAAATTCGTTTGAAAAGGGTCATGGGTCGCCTCACTGGCC‑TGCCTGCGCGGTCTGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGA > NC_002947/1469012‑1469310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |