| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,575,429 | A→C | 8.1% | intergenic (+46/‑142) | pcaF‑I → / → pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,575,429 | 0 | A | C | 8.1% | 443.7 / 4.8 | 158 | intergenic (+46/‑142) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| Reads supporting (aligned to +/- strand): ref base A (56/84); new base C (9/8); total (65/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 164 total aligned reads displayed.
TGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTC > NC_002947/1575280‑1575578 | tgactgCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCa > 1:430530/1‑150 (MQ=255) gactgCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCAc < 1:508505/150‑1 (MQ=255) gactgCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑AG‑GATacac > 1:6446395/1‑150 (MQ=255) tgCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCa > 2:4604190/1‑150 (MQ=255) cGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCCCGCCAACC‑GG‑GATCCACCCaaa > 1:3647837/1‑149 (MQ=255) gTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCACTc > 2:5550894/1‑150 (MQ=255) ttGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCa < 2:6534798/150‑1 (MQ=255) tGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCATCA‑GG‑GTTCCACGCAATCAc < 1:5908846/150‑1 (MQ=255) cACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCt < 1:1556501/150‑1 (MQ=255) ccAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCtgt < 1:3563171/150‑1 (MQ=255) ccAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCtgt < 1:3562959/150‑1 (MQ=255) cAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCtgtg < 1:5710567/150‑1 (MQ=255) aGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTgg < 1:1026489/150‑1 (MQ=255) aGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTgg < 2:6340629/150‑1 (MQ=255) cTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGa > 2:4814488/1‑150 (MQ=255) cTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGAGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGa < 2:2646565/150‑1 (MQ=255) gagaAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCGCGCCAAAA‑GG‑GGTCCACGCACACACCCGGGGGGGCg > 1:6563806/1‑150 (MQ=255) gagaAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCg > 2:1584316/1‑150 (MQ=255) agaagaGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCgg < 2:4873794/150‑1 (MQ=255) gacgcgTGGCGGTCGCAAGGGCCTGGCGACCCGGTGTGTGGGGGTCGGCCAAGGTCTGGCGTTGGCCATCGCGCGGGTTTGACCTGGACCGGCCTCTTCGCGGGGACGCCCGCTCCAACC‑GG‑GCTCCCCGCAATCACCTGTGGGAGCggg < 2:368646/145‑1 (MQ=255) gaagaGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGTAGCCCGCGCCCACA‑GG‑GGTCCACGCAATCACCgggggggggggg > 1:4256400/1‑150 (MQ=255) aagaGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGc < 1:3089340/150‑1 (MQ=255) agagTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCt < 1:2842390/150‑1 (MQ=255) agagTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCACCAACA‑GG‑GATCCCCCCAAACACCAGTGGGGGCggggt > 1:5451674/1‑148 (MQ=255) gagTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGCAGCCCGCGCCAACC‑CG‑GATCCCCGCAATCACCGGTGGGAGCGGGcgt > 2:5155764/1‑148 (MQ=255) gagTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCtt < 2:3782730/150‑1 (MQ=255) gCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCcg > 2:1285509/1‑150 (MQ=255) atggTCGCCAGGCCCTTGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAAAA‑GG‑GGTCCACGCAATCACCAGTGGGAGCGGGCGTCCCcg > 1:1417171/3‑150 (MQ=255) gTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGa < 1:5511724/150‑1 (MQ=255) tCGCACGGGCCTGGCGACCTTGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTTTACCGGCCTCTTCGCGGGGAAGCCCGCTCCCACA‑GGTGATTGCGTGGATC‑CCTGTTGGAGCGGGCTTCCCCGCGaa < 1:2685597/150‑1 (MQ=17) tCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCCCGCCCACC‑GG‑GGTCCCCCCCAAAACCAGGGGGGGCGGGCGTGCCcgccga > 1:2986633/1‑147 (MQ=255) gCACGGGCCTGGCGACCTTGTGTGTGGGTGTCGGCCACGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTCCCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTCCCCCGCGAaga < 1:5499905/150‑1 (MQ=255) gCACGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGGGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑TATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAaga < 2:4163401/150‑1 (MQ=255) gCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACC‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAaga < 2:3844744/150‑1 (MQ=255) aaGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGTCCCCCGCGCCAACAGGG‑GAACCCCCCCA‑CAACAGGGGGCGCGGGCTTCCCCCCGCagacg > 1:5312682/1‑148 (MQ=255) aaGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCGCTCCAACA‑GG‑GCTCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAgg > 1:4489459/1‑150 (MQ=255) aaGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCGCCAACA‑CG‑GATCCACGCCATCACCGGTGGGAGCGGGCGTCCCCGCGACGAgg > 1:5551376/1‑150 (MQ=255) gACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCtgtg > 2:5525068/1‑150 (MQ=255) gACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCAGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCtgtg > 2:500212/1‑150 (MQ=255) aCCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTga < 2:430530/150‑1 (MQ=255) aTGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAAACACCTGTGGGAGCGGGCTTCCCCCCGAAGAGGCCTCTCCTGTGAGAc > 1:4469543/1‑150 (MQ=255) gtgtgtgGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACAt > 2:4483870/1‑150 (MQ=255) gtgtgGGTGGCGGCCACGGTCGGGCGTGGGCCATCGTGGGGGTTTGACCTGTACGGGCCTCTTCGGGGGGACGCCCGCTCCAACC‑GG‑GATCCACGCAATCCCCGGTGGGAGGGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATaa < 2:375707/150‑1 (MQ=255) tgtgGGTGTCGGCCAAGGTCTGGGGTTGGCCTCCGAGCGGGTTTGACCTGTACCGGCCTATTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACGTGTGGGAGCGGGATTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAg < 2:1949147/150‑1 (MQ=255) tgGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCCCACCAAAA‑AG‑GCTACACCCAATAACCAGTGGGGTCGGGCTTACCCCCGAAGAGGCCACTCCAGTGAGAAAAAAGGc > 1:6600483/1‑150 (MQ=255) gggTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCCCGCCAAAA‑CG‑GATAACCGCAAACACCGGGGGGCGCGGGCGTCCCCCCGAAGAGGCCGCGCCGGTGGGACATAAGGcc > 2:2847414/1‑150 (MQ=255) gtgtCGGCCATGGTCTGGCGTTGTCCATCGAGGGGTTTTGACCTGTACCGGCCTCTTGGCGGGTAAGCCCGCTCCAACT‑GT‑GATCCACGAAAGCACGTGTGGGTGGGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCa < 2:213611/150‑1 (MQ=255) gtCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCAtt < 2:2794608/150‑1 (MQ=255) gCCAAGGTCTGGCGTTGGCCATCGCGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGTAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCa < 1:6217944/150‑1 (MQ=255) ccAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCGCGCCAACC‑GG‑GGTGCCCCCCAACACCTGGGGGGGCGGGGGTGCCCGCGCAGGGGCCTCGCCGGGGGGGCCGAAGGCCCCTTggccg > 1:4904174/1‑146 (MQ=255) cAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGCAGCCCCCGCCAACA‑GG‑GCTCCCCCCAATAAACAGTGGGTGCGGGCATCCCCCCGAAGAGGCCTCGCCTGTGAGACCTAAGGCCCAGTGCCacc > 2:844848/1‑148 (MQ=255) atggTGTGGCGTTGGCCATCGCGGGGGTTTGCCCTGTACGGGCGTCTTGGCGGGGAAGCCCGCTCCAACT‑GG‑GATCCACGCAATCACGTGTGGGTGCGGGCTTCCCGGCGTAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGcc < 2:5885925/148‑1 (MQ=255) aaGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GTTCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGcc < 2:1793050/150‑1 (MQ=255) cTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATa < 2:6127122/150‑1 (MQ=255) tGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAg > 2:5606617/1‑150 (MQ=255) ggCGTTGGCCATGGCGGGGGTTTGACCGGTACCGGCCTCTTCGCGGGGACGCCCGCTCCAACC‑GG‑GATCCCCGCACTCACCGGGGGGCGCGGGCTGCCCCGCGAAGAGGCCTCTCCTGTGAGACCTAAGGCCCATTGCCAGCCCGCTAGc < 2:1882089/150‑1 (MQ=255) ggCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGTAAGCCCGCTCCAACA‑GG‑GATCCACGAAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGc < 1:6804198/150‑1 (MQ=255) ggCGTGGGCCAGCGCGGGGGTTGGACCGGTCCCGGCCTGTGCGGGGGGACGCCCGCGCCACCC‑GG‑GCGCCCCGCAACCCCCGGGGGGCGCGGGCTGCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGc < 2:1882141/150‑1 (MQ=255) ggCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGAGCCCGCGCCCACA‑GG‑GGTCCAAGCCAAAAACGGGGGGGGCGGGCGTCCCCCCCGAGAGGCCACTCCGGTGGGACAAAAGGGCCAATGGCCGCCCCATAGCGGaaag > 2:2869252/1‑148 (MQ=255) tCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGGACCCCCCGCCCACA‑CG‑GATCCAAGCCAACACCGGGTGGAGCGGGCATCCCCCCGAAGAGGCCACTCCAGTGAGTCAAAAGGCCCAATTCCAGCCCCATAGCGGAACGAggtt > 2:2289027/1‑147 (MQ=255) cgcgCGGGTTTGCCCTGTCCCGGCCTCTTCGCGGGGACGCCCGCTCCAACC‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAgtgtg < 2:6303215/147‑1 (MQ=255) gAGGGGGTTTGTGCTGTACCGGCCTTTTCGCGGGGTTGCCGGCTCAAAGC‑GG‑GATCCTCGAATTCAGGTGTGGGTGCGGGCTTCCGCTCGAATTGGACTCTGCTTTGAGACATTAGGCCCATTGCCAGCCCGATAGCGGAACgtgtgtgt < 2:3159907/150‑1 (MQ=255) gggTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACt < 1:2808440/150‑1 (MQ=255) ggTTTGACCTGTACGGGCCTCTTCGGGGGGAAGCCCGCTCAAACT‑GG‑GATCCACGAAATCACCTTTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTa < 2:1701599/150‑1 (MQ=255) ggTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTa < 2:6726798/150‑1 (MQ=255) ggTTTGACCGGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTa < 2:6543326/150‑1 (MQ=255) gTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAg < 2:6646603/150‑1 (MQ=255) gTTTGACCGGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAg < 2:1417171/150‑1 (MQ=255) gcccTGTCCCGGCCTCTTCGCGGGGACGCCCGCTCCAACA‑GG‑GATCCACGCAATCCCCTGTGGGTGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTAt < 1:6280789/148‑1 (MQ=255) cgggTACGGGCCAGTTCGCGGGGACGCCCGCCACTACA‑GT‑TACCCACGCAATCACCTGTGGGAGGGGGCTTCCCCGGGATGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAAAGAGTGTGTTACTAGGTATGt < 1:3401493/147‑1 (MQ=255) tcccGGCCTCTGCGGGGGCACCCCCGCACAAACC‑GG‑TACCCACCAAATCACGTGGGGGCGCGGGCTCCCCCGCTAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAg < 1:1466670/148‑1 (MQ=255) ccGGCCTCTTCGGGGGGACCCCCGCACAAACC‑GG‑TAACCACGAAACCCCGTGGGGGCGGGGGTTCCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGaa < 1:1842613/150‑1 (MQ=255) ccGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCGGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGaa > 2:5015029/1‑150 (MQ=255) tctTCGCGGGGAAGCCCGCTCCCACA‑GGTGATTGCGTGGATC‑CCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGGGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTGTGTCTAGAACTACCt > 2:662144/1‑150 (MQ=17) tctTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGCTAGCGGCACGAGTGTGTTACTAGGTATGTCTAGAACTACCt > 2:6684518/1‑150 (MQ=255) tctTCGCGGGGAAGCCCGCTCCAACA‑GG‑CATCCCCGCAATCACCTGTGGGAGCGGGCTCCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCt < 2:3037642/150‑1 (MQ=255) tCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAgg > 2:5238015/1‑150 (MQ=255) cgcgGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGa < 1:3866893/150‑1 (MQ=255) gcgGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGc > 1:2337901/1‑52 (MQ=255) aaGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGGATGTCTAGAACTACCTAGGACCCTCCa > 1:4665897/1‑150 (MQ=255) aGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAg < 2:3875964/150‑1 (MQ=255) aGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAg < 2:4172421/150‑1 (MQ=255) cccGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa > 1:511170/1‑150 (MQ=255) cccGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa < 2:2842575/150‑1 (MQ=255) cccGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa < 2:4579831/150‑1 (MQ=255) ccGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAggct > 2:6759755/1‑148 (MQ=255) ccGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAg > 1:4887133/1‑150 (MQ=255) cGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGt > 2:1027508/1‑150 (MQ=255) cAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAAcc > 2:2778431/1‑150 (MQ=255) aaCA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAAccc > 1:2117020/1‑150 (MQ=255) aaCA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAAccc > 2:4886359/1‑150 (MQ=255) aaCA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAAccc > 1:1237794/1‑150 (MQ=255) aaCA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTAGTTCTAGACATACCTa > 1:6432871/1‑129 (MQ=255) aaCA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTAGTTCTAGACATACCTa < 2:6432871/129‑1 (MQ=255) g‑gATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa > 2:6185292/1‑137 (MQ=255) g‑gATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGa < 1:6185292/137‑1 (MQ=255) g‑gATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCAt > 1:2384193/1‑150 (MQ=255) accACGCAAACCCGGGTGGGCGGGGGCTGCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGAc < 1:1749373/149‑1 (MQ=255) aCGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTc > 2:5441066/1‑150 (MQ=255) aCGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTc > 2:77194/1‑150 (MQ=255) | TGACTGCGTTGCACCAGCTGGAGAAGAGTGGCGGTCGCAAGGGCCTGGCGACCATGTGTGTGGGTGTCGGCCAAGGTCTGGCGTTGGCCATCGAGCGGGTTTGACCTGTACCGGCCTCTTCGCGGGGAAGCCCGCTCCAACA‑GG‑GATCCACGCAATCACCTGTGGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTC > NC_002947/1575280‑1575578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |