| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,644,567 | G→T | 17.5% | intergenic (‑166/‑145) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,644,567 | 0 | G | T | 17.5% | 602.7 / 116.5 | 252 | intergenic (‑166/‑145) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (130/77); new base T (26/18); total (157/95) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.60e-01 | |||||||||||
Only 100 of 258 total aligned reads displayed.
GAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAA > NC_002947/1644419‑1644716 | gAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCgcgc < 2:1470233/150‑1 (MQ=255) aaaGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGcc > 2:2760642/1‑150 (MQ=255) ggggACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCTCCtac < 2:3414107/150‑3 (MQ=255) gggACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTa > 1:1029937/1‑150 (MQ=255) aCGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGa > 2:5845429/1‑150 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAc > 2:6053120/1‑150 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAc > 2:6052735/1‑150 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAc > 2:4605164/1‑150 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAc > 2:6568370/1‑150 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:1211330/150‑1 (MQ=255) tCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACggg < 2:4186530/150‑1 (MQ=255) cTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑t < 2:6226232/150‑1 (MQ=255) ttGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGTTCCTACAGGCGCGGG‑tt < 2:741641/150‑1 (MQ=38) ttGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑tt < 2:1008332/150‑1 (MQ=255) ttGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑tt > 1:3749306/1‑150 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTAccc > 1:4917360/1‑150 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCcgc < 1:862661/150‑1 (MQ=255) gTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCcgcg > 2:3947322/1‑150 (MQ=255) aCATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAgg < 1:8448/150‑1 (MQ=255) aTCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGG‑ttt > 1:6206958/1‑135 (MQ=37) aTCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGcc < 2:824618/150‑1 (MQ=255) tCAGGGTCAAGCGCCCCAAGGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTACTTCTGCTGATATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGccc > 2:6716870/1‑150 (MQ=255) aGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGc > 1:1396856/1‑146 (MQ=255) aGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGG‑TTTACTcgc > 2:1077836/1‑131 (MQ=25) aGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGG‑TTTACTcgc < 1:1077840/131‑1 (MQ=25) gcgcCCCATTGTTACGGCATTAAAAAAGGCCGGCGGGGCAGATACCGGATTTGTAATTCTGCTGTTTTCTGGCTGTCTTTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGTAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCca < 2:5732591/150‑1 (MQ=38) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCcacaca > 1:6052817/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAAACCGCGCCAGTAGGAACGGG‑TTTTACCGCGAAGAGGCCCGAACAGTCcacaca > 1:4596220/1‑150 (MQ=255) cAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAg > 2:6330672/1‑150 (MQ=255) aCGGCATTAAAAAAGGCCGGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGT‑TTTACCCGCGATGAGGCCCGAACAGTCCACACAAGGCCACAt < 2:5251225/150‑1 (MQ=255) aCGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAt > 1:455233/1‑150 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCTCGCCTGTAGGAACGGG‑TTTACAAGCGAAGAGGCCAGAACAGTCCACACAAGGACACATTgaa > 2:6188994/1‑148 (MQ=255) aTGAAAAAAGGCCTGGGGTGCTGATAACGTATTTTTAATTCTGCTGTTATCTGGGTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTTGGACGGGG‑TTTACCCGCGATGAGGCCCGAACAGTCCACACAAGGCCACATTGCAg < 2:223399/150‑1 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAg > 1:4618291/1‑150 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAg > 2:4786684/1‑150 (MQ=255) tGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAgg > 1:3333738/1‑150 (MQ=255) cTGCGGTGCATATAACGGATTTGTAATTCTGCTGTTATCTGGCTTTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATccc < 2:5514777/150‑1 (MQ=255) gTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCt > 1:4537279/1‑150 (MQ=255) aaCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCCCCTGTAGGAACGGG‑TTTAACCGCGCAGAGGGCCCAAAAGACCACACAAGGCCACAATGCACGACAGTAATCCCCGCCGCACCATGc > 1:3424945/1‑150 (MQ=255) aCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCATCGCGAGTAAACCCGCGCCTGGAGGAACCGG‑TTTACCCGCGAAGCGGCCCCCACAGTCCACACAAGGCCACAATGCAGGACTGTAATCCCCGCCTCCCCTTGcc > 1:3269816/1‑150 (MQ=255) ggATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCCCGAAGAGGCCCCAACAGTCCACACAAGGCCACCGTGCAGGACTGTAAACCCCGCCTCACCATGCCGt > 1:5813934/1‑150 (MQ=255) ttttGTATTTCGGCTGTTATGGGGGTGTCTGTGCGGGCCTCTTCGCGAGTAACCCCGCGCCTGTCGCACGGGG‑TTTACCCGCTATGCGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTa < 1:2049134/149‑1 (MQ=255) tGTATTTGTGCTGTTAGGGGGGTGTCTGTGGGGCCCTCTGCGCGCGTAACCCCGCGCGTGTTGCACGGGG‑TTAACCCGCGACGCGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagcc < 1:266092/150‑1 (MQ=255) tGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagcc > 2:186628/1‑150 (MQ=255) gTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagcca > 1:441021/1‑150 (MQ=255) gTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACAGTAATCCCCGCCTCACCTTGCCGTTagcca > 2:3086609/1‑150 (MQ=255) ttCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGccc > 1:5104372/1‑150 (MQ=255) tgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTACACCCGCGCCTGTAGGAACGGG‑GTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCg > 2:3681933/1‑150 (MQ=255) tgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCg > 2:3030159/1‑150 (MQ=255) gtgTTATGTGGCTGTCTTTGCGGGCCTCTTGGCTTTTAACCCCGGGAGTGTAGGACGGGT‑TTTACCCGGGACGTGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCt < 1:6359349/149‑1 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGTGGCCCGAACAGTCCACACAAGGCCCCATTGCCGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 1:4138652/1‑150 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGTACAGTCCACACAAGGCCACATTGCAGGACTGTAAGCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 1:1310177/1‑150 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 2:3962884/1‑150 (MQ=255) tttATCGGGCTGTCTGTGCGGGCCTCTTCGCGCGAAAACCCGCGCCTGTCGGAAGGGT‑TTTACCCGCCACTTGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAg < 1:1381905/149‑1 (MQ=255) gTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAg < 2:5812888/150‑1 (MQ=255) cTGGCTGACTGTTCGGGCCTCTGCGCGAGTAAACCCGCGCCTGTAGGAAGGGG‑TTGACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATgg < 2:5282456/150‑1 (MQ=255) ttCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt > 2:4697352/1‑150 (MQ=255) ttCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCCCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt > 1:3978874/1‑150 (MQ=255) tCGGGCCTCTTCGCGGGTAAACCCGGTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAACGCCACATTGCAGGACTGTAATCCCCGCCGCACCGTGCCGTTAGCCAGCCCGCGCGAGGATGGCCGTGTCTTATc > 1:1624987/1‑150 (MQ=18) ggCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGt > 2:2738654/1‑150 (MQ=255) cctatgcgcgAGAAACCCGGCGCCT‑TTCGAACGGGTTTTCCCCGCGACGTGCCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 1:2891268/144‑1 (MQ=255) ctctTCGCGGGTAAACCCGTTCCTACAGGCGCGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat > 2:4788265/1‑150 (MQ=37) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 1:6791984/1‑150 (MQ=255) ctTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatta > 2:6758368/1‑150 (MQ=255) ctTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatta > 2:3299350/1‑150 (MQ=255) ctTCGCGAGTAAACCCGCGCCTATAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatta < 2:3771874/150‑1 (MQ=255) ttCGCGGGTAAACCCGTTCCTACAGGCGCGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 2:1611082/1‑150 (MQ=37) ttCGCGAGTAAACCCGCGCCTGTAGGAACTGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 1:5761581/1‑150 (MQ=255) ttCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc < 1:2760599/150‑1 (MQ=255) ttCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc < 2:4582894/150‑1 (MQ=255) ttCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 1:5192153/1‑150 (MQ=255) tCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACg > 1:2151106/1‑150 (MQ=255) tCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACg > 2:1914972/1‑150 (MQ=255) cgcgATTAACCCCGCGCCTTTTGTAAGGGG‑TTTACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 1:1834354/150‑1 (MQ=255) cgcgAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 2:3484817/150‑1 (MQ=255) gcgGGTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 1:5283642/1‑150 (MQ=37) gcgGGTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGACCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 1:2780667/1‑150 (MQ=25) cgAGTAAACCCGCGCCTGTAGGAACGGG‑ATTACCGGCGATTTGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAgg < 1:713400/150‑1 (MQ=255) gggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:4296722/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:216496/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:3859897/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:2508483/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCCGATCGGTTATTACGAGGc > 1:3499812/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGACCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:1080944/3‑150 (MQ=37) gAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:1959699/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:2785546/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:758206/1‑150 (MQ=255) ggTAAACCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa > 1:2366849/2‑150 (MQ=37) aaaCCCGTTCCTACAGGCGCGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAac > 2:2404982/1‑150 (MQ=38) aaCCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAaca > 1:2515525/1‑150 (MQ=255) ccccGCGCCTTTCGTAAGGGG‑TTTACCCGCTATGTGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac < 1:5845429/149‑1 (MQ=255) aCCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac < 2:4866990/150‑1 (MQ=255) cccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 1:6630080/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 1:1273862/1‑150 (MQ=255) ccGCGCCTGTAGTAAGGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa < 1:3009489/150‑1 (MQ=255) ccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGTCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 2:1300133/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 1:22734/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 1:5137614/1‑150 (MQ=255) gcgcCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATg > 2:5588987/1‑150 (MQ=255) gcCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGaa < 2:4373568/150‑1 (MQ=255) | GAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAA > NC_002947/1644419‑1644716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |