| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,708,241 | G→C | 20.3% | intergenic (+99/‑68) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,708,241 | 0 | G | C | 20.3% | 614.7 / 165.5 | 282 | intergenic (+99/‑68) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (153/72); new base C (37/20); total (190/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-02 | |||||||||||
Only 100 of 285 total aligned reads displayed.
CCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGA > NC_002947/1708092‑1708390 | cGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGc < 2:1408661/150‑1 (MQ=255) gTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑t < 2:5647511/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGATGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:6136043/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:5402819/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑ttt < 1:851858/150‑2 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACTGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt < 1:2412312/150‑4 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGt < 1:6450582/150‑1 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt < 2:1014546/150‑4 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACAAGCGTCCGCAGGCCTGAGTGAGCTGAAAGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑TTGt < 2:1810510/150‑1 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GTGTa > 2:2614365/1‑150 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAg < 1:5392037/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGa < 1:2629171/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGa < 1:915374/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGc < 1:6048394/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑TTGTAGGAGc < 2:2481555/150‑1 (MQ=255) aCGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑g < 1:5941256/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑gg < 1:4372268/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 1:1228804/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 2:2286938/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 2:4005328/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 2:4825847/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 1:3473370/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑ggg < 2:805458/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑ggg < 2:3338197/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg < 1:2932929/150‑1 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGttt < 1:2291135/150‑1 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGttt < 2:1996805/150‑1 (MQ=25) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCCCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGGTTa > 2:2941972/1‑150 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCTAAAAAGGCC‑CTGTAGGAGCAGGGttt > 1:4187138/1‑150 (MQ=255) tGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑ccc > 2:4470438/1‑150 (MQ=255) gCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCGACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAgg > 2:1494995/1‑150 (MQ=255) aTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGcc > 2:1666479/1‑150 (MQ=255) aTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGcc > 1:5652823/1‑150 (MQ=255) gCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGTAACACGCGACGACAAAAGGC‑GTGTAGGAGG‑GGGTTTA‑ACCGCGAAGGGGGCAGCACTTGAGAAAAAcccccca > 1:5335002/1‑148 (MQ=255) cTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATg > 2:5818218/1‑150 (MQ=255) aaCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GTGGAGGAGC‑GGGTTTA‑CCCGCGCAGGGGCCAGCACGGACGAAACACCCCCATGAgg > 2:4758677/1‑150 (MQ=255) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCTCCAACAAAAGGC‑GTGTGGGAGC‑GGGTTTT‑CCCGCGCAGGGGCCAGCACAGACCAAAAAACCCCAAAAGGTAAccccc > 1:968035/1‑150 (MQ=25) tttCGTGGGGTCTTTTTGTTGCCTTATTTTTTTTGTTGTCTGTACGGGCCTTTTGGGGGTTAAACCCGCTCCAACAACGGCC‑TTGTGGGAGG‑GTTTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTg < 1:2197892/150‑1 (MQ=255) tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAAAACCCCCAAGAGGTATCCCCCGTg > 2:416509/1‑150 (MQ=255) gcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGGATCCCCCGTGACACCCGCCa > 2:6846354/1‑150 (MQ=255) cTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGGTGGAGC‑GGGTTTA‑CCCGCGTAGGGGCCAGCACTGACGAAAAACCCCCATGAGGTATCCCCCGGGGCACCCGCCAt > 2:5977262/1‑150 (MQ=38) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCCCTCCGACAAAGGCC‑GTGTGGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCCCTGACGAAACAACCCCCTTATGTATCCCCCGGGCCACCCGCCATg > 1:4933865/1‑150 (MQ=25) ttGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGGAGGAGC‑GGGTTTA‑CCCGCGCAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGAc > 2:3826898/1‑150 (MQ=255) ccTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCACCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAAGCCTGACCaa > 2:362374/1‑150 (MQ=255) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCCCGGGTAAAACCCCACCAACAAAGGCC‑ATGTAGGAGC‑GGGTTTA‑CCCCCCAACGGGCCAGCCCAGACGAAACACCCCCAAGAGGTATCCCCCGTGACACCCCCCAAGCCTGAcccacg > 2:690352/1‑146 (MQ=255) tttATGTTGTCAGTACGGGCATCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGcgccgc < 1:5723192/150‑1 (MQ=255) ttATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAAAACCCCCATGAGGTATCCCCCGTGACACCCGCCAAGCCTGACCAAGGCgccgcc > 1:6835782/1‑150 (MQ=255) tCAGTACCGGCCTCTTCGCGGGTAAAACCCCTCCGACAAATGCC‑TTGTAGGAGC‑GGGTTTT‑CCCGCGAACGGGCCCGCACTGACGAAAAAACCCCCAGAGGTATACCCCCGGACACCCCCCCATCCGGACCAAGGCGCCGCCCGCCTCGc > 1:2795121/1‑150 (MQ=19) cAGTACCGGCCTCTTCGCGGGTAAACCCGCACCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGcc > 2:2740873/1‑150 (MQ=255) ttCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑ACCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCg > 2:3108899/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 1:2746390/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 2:3498899/1‑150 (MQ=255) gTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:3571215/1‑150 (MQ=255) tAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:5133249/1‑150 (MQ=255) tAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 1:4006554/1‑150 (MQ=255) aaaCCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 1:5503228/1‑150 (MQ=255) aaaCCCGCTCCAAAACCCGCG‑TTTTAGGTG‑‑GGTTTTACCCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc < 1:113252/150‑1 (MQ=255) cccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGt > 1:6209893/1‑85 (MQ=21) cccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:2540069/1‑150 (MQ=255) cccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:2645429/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:5602309/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCact > 2:4609315/1‑148 (MQ=255) cccGCTCCAACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt < 2:4221085/150‑1 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:6587268/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:1543595/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:4110476/1‑150 (MQ=255) gcaccTCCAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc < 1:480907/147‑1 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:644797/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:5001628/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:3210897/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:4321560/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:745126/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCATGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1947994/1‑150 (MQ=255) tCCTACCACGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa < 2:533529/150‑1 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCACTACCaa > 2:5910368/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:318724/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:6625163/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:6290245/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:6059119/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:6177995/1‑150 (MQ=255) cTACACCGGCG‑TTGTCGGTGC‑GGTTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg < 2:2431100/150‑1 (MQ=255) cTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2993113/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:6283668/1‑150 (MQ=255) tACAAGGCCT‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:3011365/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:1329218/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:3653567/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:5851139/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCCGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAACGCGTGCCATACCAAggg > 1:5538922/1‑149 (MQ=255) aCAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:3275042/1‑150 (MQ=255) aCAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:133269/1‑150 (MQ=255) aCAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACAACCGCCATGCCTGACCAAGGCGCCGACGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:3831819/1‑150 (MQ=255) acaaGGCCTTTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:5031608/3‑150 (MQ=255) caaGGCCTTTGTAGGAGC‑GGGTTTA‑CCTGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 1:4640400/2‑150 (MQ=38) aaaGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:3369676/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:622313/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:322872/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:1849447/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:2139692/1‑150 (MQ=255) aGGCC‑TTGTTGGAGG‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa < 2:121666/150‑1 (MQ=255) gCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATCAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGa < 1:1666479/150‑1 (MQ=255) | CCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGA > NC_002947/1708092‑1708390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |