| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,708,243 | C→T | 21.3% | intergenic (+101/‑66) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,708,243 | 0 | C | T | 21.3% | 539.7 / 142.8 | 278 | intergenic (+101/‑66) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (151/65); new base T (37/21); total (188/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 | |||||||||||
Only 100 of 284 total aligned reads displayed.
GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACT > NC_002947/1708094‑1708392 | gTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑t < 1:3686691/150‑1 (MQ=255)gTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGcc > 2:4218243/1‑150 (MQ=255) tCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑t > 2:6472577/1‑150 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:5623668/150‑1 (MQ=255) gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTg < 2:2256613/150‑1 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACTGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt < 1:2412312/150‑4 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCGACAAAGGccgttta > 1:6792479/1‑145 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑Ag < 1:5392037/150‑1 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATATTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCGCCGACAAAGGCC‑GGGT‑Ag > 2:20602/1‑150 (MQ=39) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGa < 1:915410/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGa < 2:1265651/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGa < 1:2629171/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCAACAAAGGCC‑GTGT‑Aggg > 1:3604340/1‑149 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGAGc < 1:5510198/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGAGc < 1:6048394/150‑1 (MQ=255) aCGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑g < 1:5941256/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCTGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑gg < 2:5546927/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGAGC‑gg < 1:4372268/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑gg < 1:3473370/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑gg < 2:2454601/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑gg < 2:3240387/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑gg < 2:4005328/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑gg < 1:1228804/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGAGC‑ggg < 2:805458/150‑1 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGttt < 1:2291135/150‑1 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCTAAAAAGGCC‑CTGT‑AGGAGCAGGGttt > 1:4187138/1‑150 (MQ=255) ccTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑GTGT‑AGGAGC‑GGGTTTA‑c < 2:6054800/150‑1 (MQ=255) tGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑ccc > 2:4470438/1‑150 (MQ=255) tCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACACCAACAACAAAAGCC‑ATGTAAGGGCC‑GGGTTTA‑ccgcg > 1:2892258/1‑147 (MQ=255) gCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTGTATGTTGTCAGTACCGGCCTCTTCGCGGGTAATCCCGCTCCTACAAAGGCC‑TTGT‑TGGAGC‑GGGTTTA‑CCCGCGAAgg > 2:5319310/1‑150 (MQ=255) aGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCCCGAAGGGGCCAGCCCAGACg > 2:261912/1‑150 (MQ=255) gCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGTAACACGCGACGACAAAAGGC‑GTGT‑AGGAGG‑GGGTTTA‑ACCGCGAAGGGGGCAGCACTTGAGAAAAAcccccca > 1:5335002/1‑148 (MQ=255) cTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATg > 2:5818218/1‑150 (MQ=255) aaCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GTGG‑AGGAGC‑GGGTTTA‑CCCGCGCAGGGGCCAGCACGGACGAAACACCCCCATGAgg > 2:4758677/1‑150 (MQ=255) cgccTTTCGCGGCGGATTTTTCTTGCCTTATGCTTTATGTTTTCTGTACCGGCCTCTTCGCGGTTAAACCCGCTCCTCCACCGGCT‑TTGT‑CGGCGC‑GGTTTTC‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATcccc < 2:2989460/150‑1 (MQ=255) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑ACCGCGAAGGGGCCAGCACTGACGAAACACCCCCCTGAGGTATccccc > 1:6277982/1‑150 (MQ=255) tttCGTGGGGTCTTTTTGTTGCCTTATTTTTTTTGTTGTCTGTACGGGCCTTTTGGGGGTTAAACCCGCTCCAACAACGGCC‑TTGT‑GGGAGG‑GTTTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTg < 1:2197892/150‑1 (MQ=255) ggcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGa > 2:2585731/1‑81 (MQ=21) gcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGGATCCCCCGTGACACCCGCCa > 2:6846354/1‑150 (MQ=255) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCCCTCCGACAAAGGCC‑GTGT‑GGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCCCTGACGAAACAACCCCCTTATGTATCCCCCGGGCCACCCGCCATg > 1:4933865/1‑150 (MQ=25) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTACTACAAAGGCC‑TTGT‑AGTAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACAGACGAAAAACCCCCATGATGTATAACCCGTGTAACCCGCCaag > 2:1425317/1‑148 (MQ=25) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCAACAACAAAGGCC‑GTGT‑AGGCGC‑GGGTTTA‑CCCCCGAAGGGGCCAGCACTTACGAAAAACCCCCAAGAGGTATCCCCCGTGACAcccccccag > 1:474879/1‑147 (MQ=37) ttGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGG‑AGGAGC‑GGGTTTA‑CCCGCGCAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGAc > 2:3826898/1‑150 (MQ=255) ccTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCACCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAAGCCTGACCaa > 2:362374/1‑150 (MQ=255) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCCCGGGTAAAACCCCACCAACAAAGGCC‑ATGT‑AGGAGC‑GGGTTTA‑CCCCCCAACGGGCCAGCCCAGACGAAACACCCCCAAGAGGTATCCCCCGTGACACCCCCCAAGCCTGAcccacg > 2:690352/1‑146 (MQ=255) tttATGTTGTCAGTACGGGCATCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGcgccgc < 1:5723192/150‑1 (MQ=255) tATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGAACAAGGCGccgccg > 2:5944376/1‑150 (MQ=255) gtCAGTACCGGCCTCTTCGCGGGTAATACCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTAGCCCCCGTGACACCCCCCATGCCTGGCCAAGGCCCCCCCGGCATcc > 2:5392311/1‑149 (MQ=37) tCAGTACCGGCCTCTTCGCGGGTAAAACCCCTCCGACAAATGCC‑TTGT‑AGGAGC‑GGGTTTT‑CCCGCGAACGGGCCCGCACTGACGAAAAAACCCCCAGAGGTATACCCCCGGACACCCCCCCATCCGGACCAAGGCGCCGCCCGCCTCGc > 1:2795121/1‑150 (MQ=19) cAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑ACCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCCAGGCGCCGCCGGCATCGcc > 2:2740811/1‑150 (MQ=255) ggCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCAAGAGGTATCCCCCGGGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCCACGCCAccgccg > 2:1520110/1‑150 (MQ=37) gCCTCTTCGCGGGTAAAACCGCTCCTACAAAGGCC‑TTGT‑ATGATC‑GGGTTTA‑CCCGCGAAGGGGCCAGCAATGACGAAAAACCCCCATGATGTATCCCCCGTGACACCCGCCAGGCCGGACCAAGGCGCCCCCGGCAACGCCCccgccgg > 2:1953503/1‑149 (MQ=255) ttCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑ACCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCg > 2:3108899/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 1:2746390/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 2:3498899/1‑150 (MQ=255) gcgGGTAAACCCGCTCCAACAACGGCC‑TTGT‑AGGAGC‑GGTTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 2:1842428/150‑1 (MQ=255) gggTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGc > 1:563945/1‑150 (MQ=255) gTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:3571215/1‑150 (MQ=255) tAAACCCGCTCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:5133249/1‑150 (MQ=255) tAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 1:4006554/1‑150 (MQ=255) tAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCAGCGCCACCGCCGGCGCCGAAAGCGTg > 2:2778428/1‑150 (MQ=255) aaaCCCGCTCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 1:5503228/1‑150 (MQ=255) aaaCCCGCTCCAAAACCCGCG‑TTTT‑AGGTG‑‑GGTTTTACCCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc < 1:113252/150‑1 (MQ=255) cccGCTCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:2540069/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:6627847/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑GTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCact > 2:4609315/1‑148 (MQ=255) ccGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:1543595/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:889504/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:4110476/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGT‑AGGAGA‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGAGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:6124866/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:5001628/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:4321560/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:745126/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:3210897/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCATGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1947994/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCACTACCaa > 2:5910368/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:318724/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGAGGCCGGTACTGACAAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:3411830/1‑150 (MQ=37) tCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCCTGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa < 2:6268541/150‑1 (MQ=255) tCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:1362534/1‑150 (MQ=255) ccTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg > 1:6188977/1‑150 (MQ=255) cTACAAGGCCT‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:1720296/1‑150 (MQ=255) cTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2993113/1‑150 (MQ=255) tACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:1329218/1‑150 (MQ=255) tACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:5851139/1‑150 (MQ=255) aCAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCTCCGAAAGCGTGCAATACCAAGGcc > 1:713911/1‑150 (MQ=255) aCAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:3275042/1‑150 (MQ=255) cAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 2:2314104/1‑150 (MQ=255) acaaGGCCTTTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:5031608/3‑150 (MQ=255) acaaGGCCTTTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:6169568/3‑150 (MQ=255) acaaGGCCTTTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:4229621/3‑150 (MQ=255) caaGGCCTTTGT‑AGGAGC‑GGGTTTA‑CCTGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 1:4640400/2‑150 (MQ=38) caaGGCCTTTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 2:116058/2‑150 (MQ=255) aaaGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:3369676/1‑150 (MQ=255) aaaGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:622233/1‑150 (MQ=255) aaaGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:6565921/1‑150 (MQ=255) gCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATCAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGa < 1:1666479/150‑1 (MQ=255) cc‑TGGT‑TGGAGG‑GGTTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGAc < 1:6389377/150‑1 (MQ=255) c‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 2:6442116/1‑150 (MQ=255) c‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 2:3047832/1‑150 (MQ=255) | GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGT‑AGGAGC‑GGGTTTA‑CCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACT > NC_002947/1708094‑1708392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |