| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,830,082 | G→C | 5.6% | R55G (CGC→GGC) | mutS ← | DNA mismatch repair protein MutS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,830,082 | 0 | G | C | 5.6% | 951.3 / 31.0 | 290 | R55G (CGC→GGC) | mutS | DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): ref base G (149/123); new base C (12/5); total (161/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 311 total aligned reads displayed.
TCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCG > NC_002947/1829934‑1830230 | ccACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCgcggg > 2:4145089/1‑150 (MQ=255) ccACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCgcggg < 1:859862/150‑1 (MQ=255) cACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCgcgggc > 2:4489181/1‑150 (MQ=255) aCCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCATCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCgcgggcg < 2:6849716/150‑1 (MQ=255) aCCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCgcgggcg > 1:4308649/1‑150 (MQ=255) aCCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCgcgggcg < 2:5025853/150‑1 (MQ=255) cGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGt > 2:5402921/1‑150 (MQ=255) gCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCCCGCGGTCAg < 2:4935099/150‑1 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAgg < 1:652901/150‑1 (MQ=255) cTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACCTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCCGGGt > 1:6475074/1‑150 (MQ=255) ttGCAGGTGGCGGGGTCGCCGATCTGCTCACAGAACACCACCGACTCGCCGAGCTAGACCAGCTTGGCCAGGTAGCCTTCGAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTg > 2:1029343/1‑150 (MQ=255) gtGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTg < 1:2477788/149‑1 (MQ=255) tggtggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGatat > 1:4216098/1‑150 (MQ=255) tggtggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGatat > 1:2578229/1‑150 (MQ=255) gtggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATcc > 2:3152679/1‑150 (MQ=255) tggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCca > 1:1716142/1‑150 (MQ=255) cGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCcagca < 1:4129082/150‑1 (MQ=255) tCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTc < 2:5540402/150‑1 (MQ=255) gcagATCTGCTCACAGATCACCACCGACTCGCCGAGATTGTCCAGCTTGGCCAGGTAGCCTTCCAGAGAATGGAACGGACTCCCGCACATGTGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCGGGGTGATATCCAGCAGTGTcgc > 2:6714509/4‑150 (MQ=255) gCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGACTGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTcgc < 2:5689929/150‑1 (MQ=255) gCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTcgc < 2:3940957/150‑1 (MQ=255) gCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTcgc > 1:5015131/1‑150 (MQ=255) gCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACAGGGGGATGGACTGGCCGGCCGACGGCCCGCGGGCGGGCCGGGGGGTATCCAGCAGGGTcgc > 1:1153108/1‑150 (MQ=255) gATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGc > 1:1238449/1‑150 (MQ=255) gATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGc > 2:2752344/1‑150 (MQ=255) aTCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGcc > 2:1917826/1‑150 (MQ=255) cTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCttttt > 1:1838736/1‑150 (MQ=255) tCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTc > 2:3645298/1‑150 (MQ=255) cacaGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCg > 2:6634674/1‑150 (MQ=255) caGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCTGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCa > 1:1478730/1‑150 (MQ=255) aGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCAt > 2:2013513/1‑150 (MQ=255) aGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCAt > 1:167814/1‑150 (MQ=255) gATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATc > 1:2388262/1‑150 (MQ=255) caccacCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTc < 1:2650885/150‑1 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGACCGGAATCCCGCACCTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTGTCGCATCTTCGtc > 2:6691226/1‑149 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa > 2:4082475/1‑150 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa > 2:3661961/1‑150 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa < 1:2180319/150‑1 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa > 2:1128496/1‑150 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa < 1:5996904/150‑1 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa > 1:4542329/1‑150 (MQ=255) cGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTagaa < 2:4661683/150‑1 (MQ=255) gACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTagaag > 2:681522/1‑150 (MQ=255) ccGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCg > 1:1613148/1‑150 (MQ=255) gAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTa < 2:3624074/150‑1 (MQ=255) gAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTa < 1:5259432/150‑1 (MQ=255) gCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGa < 1:4726604/150‑1 (MQ=255) cTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGaa < 2:4279284/150‑1 (MQ=255) cTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGaa < 2:6191006/150‑1 (MQ=255) gACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTc > 1:3884963/1‑150 (MQ=255) gACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTc > 2:6126068/1‑150 (MQ=255) gACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATACAGCAGTTTCGCGGCCATTTTAGCATATTAGGAGAAGATCTAGTAGAAGTc > 1:6323277/1‑150 (MQ=255) aCCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCg > 2:5127009/1‑150 (MQ=255) ccAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGc < 2:2387837/150‑1 (MQ=255) ttGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATACAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATg > 2:651489/1‑150 (MQ=255) ggCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCg < 1:248800/150‑1 (MQ=255) aGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAg < 2:1692505/150‑1 (MQ=255) ggTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGa < 2:2195127/150‑1 (MQ=255) tAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAAc < 1:1346446/150‑1 (MQ=255) cTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCa > 2:2927752/1‑150 (MQ=255) ttCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCCGGGTGATATCCCGCCGTTTCGCGGCCTTTTTCGCATCTTCGGAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAg > 1:3818741/1‑150 (MQ=255) ttCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAg > 2:1419730/1‑150 (MQ=255) aGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCGGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTgg < 2:3843580/150‑1 (MQ=255) aaTGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCg > 1:3921038/1‑150 (MQ=255) aTGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg < 1:3760494/150‑1 (MQ=255) tGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCggg < 2:727958/150‑1 (MQ=255) ggAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 1:1099604/150‑1 (MQ=255) ggAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 2:831651/150‑1 (MQ=255) ggAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 1:3510235/150‑1 (MQ=255) ggAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 1:5402921/150‑1 (MQ=255) aCGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCt < 2:5846362/150‑1 (MQ=255) cGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTg < 1:2893420/150‑1 (MQ=255) cGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTg < 1:3299863/150‑1 (MQ=255) cGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTg < 1:4488990/150‑1 (MQ=255) ggAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTgg > 1:6717103/1‑150 (MQ=255) ggAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCCCGGGCGGTCCGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCAAGCGGTAGAACATCAGCGGGTCCGGGTGCTgg > 1:920444/1‑150 (MQ=255) tCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGtttt < 1:693887/150‑1 (MQ=255) ccGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTc < 1:5616780/150‑1 (MQ=255) cGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCa < 2:856426/150‑1 (MQ=255) acaTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCt > 2:4799346/1‑150 (MQ=255) acaTGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATACAGCAGTTTCGCGGCCATTTTAGCAACTTAGTAGAATATAACGTAGAAGTCGCCCCAGCCGTAGAACAACAGCAGGTCCCGGTGCGGGTTTTTAAGCt > 1:2270896/1‑150 (MQ=255) ggggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCTGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCTTGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa < 1:1029343/150‑1 (MQ=255) ggggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa < 1:2446942/150‑1 (MQ=255) ggggATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTAGCATATTCGTAGAAGATATCGTAGAAGTCGCCCATGCGGTAGAACAAAAGCTGGTCCGGGTGCTGGTTTTTAAGCATCCa > 1:3126271/1‑150 (MQ=255) gACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTActgc < 2:4216098/150‑1 (MQ=255) gACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTActgc < 2:2578229/150‑1 (MQ=255) gACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTActgc < 2:1304799/150‑1 (MQ=255) atcacccTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGcatcat > 2:3732780/7‑150 (MQ=255) atcacccTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGcatcat > 2:5913202/7‑150 (MQ=255) ccgACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCg < 2:5999886/150‑1 (MQ=255) cgACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGAtctc < 2:5953074/72‑1 (MQ=255) cgACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGAtctc > 1:3655081/1‑72 (MQ=255) cccTGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGt > 2:5235469/3‑61 (MQ=38) cccTGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCggg > 2:4454640/3‑150 (MQ=255) ccTGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCgggg > 1:568046/2‑150 (MQ=255) ccTGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCgggg > 1:5874801/2‑150 (MQ=255) tGACCGCGGGCGGTCAGGGTGATATCCAGCCGTTTCGCGGCCTTGTTCGCATCTTCGTAGAAGATCTCGTCGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCAGCAGCgggggg > 2:3289824/1‑148 (MQ=255) aCCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgtg > 1:5537851/1‑150 (MQ=255) gcgggcggTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGc > 2:1584824/1‑150 (MQ=255) cgggcggTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCg < 2:1153108/150‑1 (MQ=255) | TCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGACTGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTGCG > NC_002947/1829934‑1830230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |