| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,952,787 | C→G | 9.8% | intergenic (‑56/+114) | PP_1748 ← / ← PP_1749 | hypothetical protein/acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,952,787 | 0 | C | G | 9.8% | 365.0 / 6.4 | 148 | intergenic (‑56/+114) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (40/83); new base G (13/3); total (62/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.52e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 160 total aligned reads displayed.
TGTCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGT > NC_002947/1952638‑1952935 | tgtCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTc < 1:3344339/150‑1 (MQ=255)tgtCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTc < 1:4735125/150‑1 (MQ=255) tCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTTGGAGCGGCCATTTGTcac > 2:4796571/1‑148 (MQ=255) tCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTcgc < 1:4165807/150‑1 (MQ=255) tCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTcgc < 1:6402792/150‑1 (MQ=255) tGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGaaa < 1:6283148/150‑1 (MQ=255) tGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGaaa < 1:6717606/150‑1 (MQ=255) tGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGaaa < 1:250883/150‑1 (MQ=255) gAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAg < 2:4689264/150‑1 (MQ=255) gAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAg < 1:4558287/150‑1 (MQ=255) gAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAg > 2:568942/1‑150 (MQ=255) gCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGc < 1:5697197/150‑1 (MQ=255) ggggCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCaaa < 2:1479639/150‑1 (MQ=255) gggtGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGTTCGGGTTCGGGGAGTCGTTCTGTCATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGc < 1:6820509/147‑1 (MQ=255) ggCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGc < 1:3207467/150‑1 (MQ=255) gCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCg < 2:1783228/150‑1 (MQ=255) gCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTTTAGCGGAAGGGCCGCAAAGcc > 2:3226479/1‑149 (MQ=255) gCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGGGGCGCGGACGGGCCGCCAAGCg > 1:3407038/1‑150 (MQ=255) gATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCg > 2:2687181/1‑150 (MQ=255) gATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCg < 1:1301830/150‑1 (MQ=255) tGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAGGGGCCGCTTTGCG‑Gccctttc < 1:2314148/150‑5 (MQ=255) tGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCTTTGCG‑Gccctttc < 2:3055741/150‑5 (MQ=255) tGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCTTTGCG‑Gccctttc < 1:4631321/150‑5 (MQ=255) gCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGTGCGGGCGTGTGTGGGGGGAGGGGCGCAAAGCC‑GCCCCCGcca > 1:1638890/1‑148 (MQ=255) gAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACAAGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGGCGTGTGGGGCGGAATGGGCGCCAAACGCGCCCCgcccga > 1:3959386/1‑145 (MQ=255) acaaTTTCCAGCAGAACGCTTTTTATATAGTCGAGATCGGGTTCGGGTAGTCGTTCGCACATGTCCAGGCCTCCGGTCGGTTTAAAATTTTGCAGTCTTGTGGGAGCGGCATTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAatat < 2:1286537/147‑1 (MQ=37) aGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGGGGGGGGAGGGCCGCAAAGCG‑GCCCCGGCActaa > 1:3287657/1‑149 (MQ=255) gCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATc < 2:1648959/150‑1 (MQ=255) gCATGTCCCGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCGCCGGTCGGGTTAAAATTTTGCCGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATc < 2:5850646/150‑1 (MQ=255) ttttCCAGCTGCACGCTTTTGAGATAGTCGTGTTCGTTTTCGGGGAGTCTTTCGTACATGTCCAGGCCTCCGGTGGTGTTAATTTTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGAAATGCG‑GCCCCGGCAATATCgg < 2:5159145/149‑1 (MQ=25) tttCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGATCGGCCATTTTTCGCGTAAGGGCCGCAAAGCG‑GCCCCCGCCAAATAGGc > 2:5509084/1‑150 (MQ=255) cagcagCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAATTGCCGCAAAGCG‑GCCCCCGCAAAATCGGCACCg > 2:6072433/1‑150 (MQ=39) gcagcaCGCGTTTGAGATAGTCGAGTTGGGGTTCGGGGAGTGGTTCGGACATGTCCAGGCCTCCGGTCGGTTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGaa < 1:5484585/150‑1 (MQ=255) cagcagGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACTTGACCCGGCCTCCGGTGGGTTTAAAATTTTGCAGTCTTGTGGGAGGGGCCTTGTGTCGCGAAAGGGCCGAAAAGCG‑GCCCCGGCAATATCGGCAGCGAAg < 1:1008010/150‑1 (MQ=38) gcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTTTCGCGAAAGGGCCGCAAAGCG‑GCCCCCGCAAAATCGGCCCCCAAGCt > 2:3970189/1‑150 (MQ=38) gcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGTAGCGGAAGGGCCGCAAAACC‑GCCCCCGCAATAACGGCACCCAAgat > 2:3970283/1‑148 (MQ=255) aCGCTTTTGAGATCGTCGAGATGGGGTTGGGGGTGTCGTTCGGAAATGACCCGGCCTCCGGTCGGTTTAAATTTTTGCCGTGTTGTGGGCGGGGCCTGGTGTCGCGAACGGGCCGCAACGCG‑GCCCCGGCAATATCGGCAGCGAAGCTga < 1:953686/150‑1 (MQ=255) aCGCGTTTGAGCTCGTCGAGATCGGGTTCGGGGAGTGGTTCGGACAGGTCCAGGCCTCCGTTCGGTTTAAAATTTTGCCGTCTTGTGGGAGCGGCCTGGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTga < 2:6324373/150‑1 (MQ=38) gttttGAGTTTGTCGAGTTGGGGTTGGGGGTGTGTTTGGGACTTGTCCTGGCCTCGGGTGGGTTTAAAATTTGGCCGTCTTGTGGGAGCGGCCTTGTGTGGCGAAAGGGCCGAAAAGGG‑GCCCCGGCGATATCGGCAGCGAAGCTGAGAc < 2:1839932/148‑1 (MQ=255) cttttGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCGGGTCGGTTTAAAATTTTGCCGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGAc < 2:4292301/148‑1 (MQ=255) cttttGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGAc < 2:4292227/148‑1 (MQ=255) gTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGAcc < 2:438038/150‑1 (MQ=255) ttGAGTTTGTCGATTTGGGTTTGGGGGTGTCGTTCGGACATGTCCTGGCCTCCGGTGGGTTTAAATTTTGGCAGTGTTGTGGGAGCGGCCTTGTGTCGCGAACGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCt < 1:5329367/150‑1 (MQ=25) ttGAGATCGTCGAGTTCGGGTTCGGGGAGTCTTTCGGACATGTCCTGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCt < 2:2884544/150‑1 (MQ=255) ttGAGATATTCGTGATCGGGTTCGGGGTGTCTTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCt < 2:2969693/150‑1 (MQ=255) ttGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCt < 2:2186364/150‑1 (MQ=255) tGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAACGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTa < 2:2592652/150‑1 (MQ=255) gagaTATTCGAGATCGGTTTCTGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCTGGTTAAAAATTTGAAGACATGTGGGAGCGGCCTTGTTTAGAGAAATGGCCGCAAAGCT‑GCCCCGGAAATATAGGCAGCGAAGCTGATACACTAg > 2:565672/1‑150 (MQ=255) gagaTAGTCGAGATCGGGTTCGGGGAGTCGTTCGTACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAg < 2:3678348/150‑1 (MQ=255) gaTAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTTGGAGCGGCCGTGTTTGGCCGAAGGGCCCCAAAACG‑GCCCCCCCAAAAAAAGCCCCGAAGCGGAGAcccaacgg > 2:1477668/1‑145 (MQ=255) aTAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAgggg < 1:5015592/150‑1 (MQ=255) tCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGATCGGCCATTTTTAGGGAAATGGCACCAAAAAG‑GCCCCCGCAAAATAGGCAGCGAAACGTAGACCCAAAGGgcgcg > 2:198379/1‑149 (MQ=255) cgcgaTGGGGTTGGGGGAGTCGTTCGGACTTGTCCAGGCCTCCGGTCGGGTTAAATTTTTGCAGTCTTGGGGGAGCGGCCTTGTGTCGCTAAAGGGCCGCAACGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCtt < 1:926869/147‑1 (MQ=255) cGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAATCG‑GCCCCCGCAATATAGGCCGCGAAGCTGAGAACCAAGGGgcgcgt > 2:2238974/1‑148 (MQ=38) gggaTCGGGTTCGGGGAGGCGTTCGGACATGTCCAGGCCGCCGGTCGGGTTAAAATTTGGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAACGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc < 1:6187266/148‑1 (MQ=255) gcgaTCGGGTTGGGGGAGTCGTTCGGACATGTCCAGGCCGCCGGTCGGGTTAAAATTGTGCCGTCGTGTGGGCGCGGCCTTGTGTCGCGAACGGGCCGCACAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc < 2:3140997/148‑1 (MQ=38) aTCGGGTTCGGGGAGTCGTTCGGACATGCCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCa < 2:6860479/150‑1 (MQ=255) cGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAATTTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCAcc < 2:1560606/150‑1 (MQ=255) gggTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTTTCGCGAAAAGTCCGCAAAACG‑GCCCCCGCCAAAAAGGCACCGAACCGGAGAACCAAAGGGCGCTTCCCAacc > 2:2616446/1‑150 (MQ=255) gggTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGTAGCGAAAGGGCCGCAAAGCG‑GCCCCCGCCAAAAACGCACCGCAGCAGAGAACCAAGGGGCGCATCGCAccc > 2:6082819/1‑150 (MQ=37) gTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCCTGTGTGGCCGAAAGGCCCCAAAACC‑GCCCCCGCAAAAAACGCCCCGCAACGGAGGACCCAAGGGCGCCTCGCACCCCa > 2:5741647/1‑150 (MQ=255) gggTGTCGTTCTGAATTGTCCTGGCCTCGGGTGGTTTTAAAATTTTGCTCTCTTGTGGGTGCGCCCTTGTGTCGCGAAGGGGCCGAAATGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTcgc < 1:565672/150‑1 (MQ=255) gAGTCGTTCGGACTTGTCCTGGCCTCGGGTGGGTTTAAAATTTGGCAGTCTTGTGGGAGCGGCCTTGTGTGGCGAACGGGCCGAAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGa < 1:3568744/150‑1 (MQ=37) gTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTTTAGCGGAAGGGCCGCCAAGCC‑GCCCCCGCCCGATCGGCCGCGACGCGGGGACCCGACGGGGGCGTCGCACCCCAATCGCcaca > 2:3195082/1‑150 (MQ=255) gTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACaa < 2:4567337/150‑1 (MQ=255) ttCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGTGGCGAAAGGGCCCCAAACCG‑GCCCCCGCAATATAGGCAGCGGAGCTGGTAACCAAGGGGCGCGTCGCACCCCAATCGCGCCACAAg > 2:3373679/1‑150 (MQ=255) tCGGACATGACCAGGCCTCCGGTCGGTTAAAAATTTTGCAGTCTTTTGGCAGCGGCCTTTTGTCGCCAAAGGGCCCAAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAgg < 1:1477910/150‑1 (MQ=38) cGGACATGTCCAGGCCGCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTGGTGTCGCGACAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGc < 2:4631680/150‑1 (MQ=255) ggACTTGCCCAGGCCTCGGGTGGTGTTAAAATTTGGCCGTCTTGTGGGCGCGGCGTTGTGTCGCGAACGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGcc < 1:6556889/150‑1 (MQ=25) gACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGGCTTGTGGGGCGGAAGGGCCGCAAACCG‑GCCCCCGCCCTCTCGGCCGCGCACCGGGGACCCACGGGGCGCGTCGCCCCCCAGTCGCGACGCACGGCCg > 2:5395956/1‑150 (MQ=255) ttGTCCAGGCCTCGGGTGGGTTTAAATTTTTGCATTCTTGTGGGTGGGGCTTTTTGTGGGTAATGGGCCGAAAAGGG‑GCCCCGGCAATATCGGCAGCGATGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTc < 2:848701/149‑1 (MQ=25) gTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGa > 1:923692/1‑60 (MQ=255) gTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCt < 1:3973896/118‑1 (MQ=255) cAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTTTGTCGCGAAAGGGCCGCAAAGCC‑GCCCCCGCAAAATCGGCCGCGAAGCTGAGACCCAAGGGGCGCGTCGCACCCCAATAGCGACACAACGCCGCACCcaca > 2:5701569/1‑150 (MQ=37) aGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGGCGTTTTTAGCGAAAGGGCCCCCAAGAC‑GCCCCCGCAAAAAACGCCCCGGACCTGATAACCAATGGGCGCGTGGCCCCCCAAAAGCCACACAAAGCCCCAACCACaa > 2:3097561/1‑150 (MQ=255) ggCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGTCGCGAAATGGCCCCAAAGCG‑GCCCCCGCAAAATACGCAGCGAAGCTGATACCCAACGGGCGCATCGCACCCCATAAGCGAAACAAGGCCGCACCCACaaa > 2:3988056/1‑150 (MQ=255) gCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTTTGTCGCGCAAGGGCCCCCAAGCG‑GCCCCCGCCAAAAACGCCGCCCACCGGGGGCCCAAGGGGGGCGTCGCCCCCCCGTCGCGACACAACGCCCCGCCCACaaaa > 2:5815179/1‑150 (MQ=255) tCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCGTGTGTCGCGAAAGGGCCGCCAAGCG‑GCCCCCGCCATATCGGCAGCGAAGCTGAGACCCAAGGGGCGCGTCGCACCCCAATCGCCACACAAAGCCGCTCCCACCAAAAGc > 1:4571137/1‑150 (MQ=255) gttCGGGTTAAAATTTTGCCGTCTGGGGGGAGCGGCGTTGTGACGCGAATGGGCCGAAACGCG‑GCCCCGGCAATATCGGCAGCGAAGCTTAGACCCTAGGGGCGCTTCGCACCCCATCCGCGACACAAGGCCGCTCCCACAAAAAGCCGa < 2:4488343/148‑1 (MQ=25) ggTCGGTTTAAATTTTTGCTGTGTTGTGGGTGGGGCCTTGTGTCGCGAATGGGCCGCAACGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGa < 2:1045392/150‑1 (MQ=25) tCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCATTTTTAGCGAAAGGGCCGCAAATCG‑GGCCCCGCAAAAACGGCAGCCAAGCTGAGAACCAAGGGGCGCTTCGCACCCCAAACGCGACACAAAGCCGCACCCACAAAAAACCCAGc > 2:5042182/1‑150 (MQ=255) tCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCATTTGTCGCGAAAGGGCCCCAAAGCC‑GCCCCCGCAAAAAAGGCACCGAACCGGAGACCCAAGGGGCGCGTCGCACCCCAAAAGCCACACAAAGCCCCACCCCCAAAAAACCCAGc > 2:2650467/1‑150 (MQ=255) aGTGTTGGGGGTGCGGCGGTGTGGCGCTACCGGCCCGCACGGGG‑CCCCCGCCAATATCGGCCGCGACGCTGAGACCCTCGGGGCGCTCCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAAcgg < 2:3625667/150‑1 (MQ=21) tCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGTATCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAAcggcc > 2:6705246/1‑150 (MQ=255) tCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAAAATAGGCAGCGAAGCTGAGACCCGAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAATCCGAGCAGTTGTCAGGCCAAcggcc > 2:2712561/1‑150 (MQ=255) tCTTGTGGGAGCGGCCGTTTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGAACCTAGGGGCGCTTCGCACCCCAATCGCGTCACAAGGCCGCTCCCACAAAAAGCCGAGCAGATGTCAGGCCAAcggcc > 2:5229991/1‑150 (MQ=25) ttGTGGGAGCGGCCTTGTGTCGCGGAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGAACCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTTTCAGGCCAAcggccgg > 2:4811385/1‑150 (MQ=255) ttGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACaa > 1:728285/1‑105 (MQ=255) ttGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACaa < 2:728285/105‑1 (MQ=255) ttGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCCAcggccgg > 2:6749070/1‑150 (MQ=255) tgtgGGAGCGGCCATGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAAAATCGGCACCCAAGCAGAGACCCAAGGGGCGCGTCGCCCCCCAATCCCGACACAAGGCCGCGCCCCCAAAAAGCCCAGCAGGTGTCAGGCCCAccgcccgc > 2:1670689/1‑150 (MQ=21) gcgCGGCCTGGGGGCGCTAACGGCCCGCAACGCG‑GCCCCGGCAATCTCGGCAGCGACGCTGAGACCCTCGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATgg < 2:5420304/148‑1 (MQ=25) ttGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcag > 1:3691077/1‑150 (MQ=255) gtgtCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca > 1:1056127/1‑150 (MQ=255) gtgtCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAATCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca > 1:2305304/1‑150 (MQ=255) gggccgcgACTGGCCCGCACCGCG‑GCCCCGCCAATTGGGGCTGCTACGCTGAGACCCTTGGGGCGCTTGGCACCCCATACGCTACACAAGGCCGCTCCCTCAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca < 2:5845603/146‑1 (MQ=255) tgtCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagcag > 1:3208521/1‑150 (MQ=255) tCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt > 1:737945/1‑150 (MQ=255) tCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt > 1:1813182/1‑150 (MQ=255) tCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt > 1:1281635/1‑150 (MQ=255) | TGTCGGTGAAGCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCG‑GCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGT > NC_002947/1952638‑1952935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |