| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,090,581 | C→T | 5.8% | intergenic (+298/‑297) | PP_1864 → / → PP_1865 | hypothetical protein/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,090,581 | 0 | C | T | 5.8% | 585.9 / 18.6 | 208 | intergenic (+298/‑297) | PP_1864/PP_1865 | hypothetical protein/transposase |
| Reads supporting (aligned to +/- strand): ref base C (141/55); new base T (7/5); total (148/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
Only 100 of 215 total aligned reads displayed.
GGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTT > NC_002947/2090435‑2090730 | ggTGACGGGCTTGGAGGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCAc < 2:2851353/150‑1 (MQ=21)ggTGACGGGCATGGAGGCCCGTCAAGCGCTGGGCCCCCGGAGGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCAc < 1:2716167/150‑1 (MQ=255) ttGACGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACg > 2:2085266/2‑150 (MQ=21) ttGACGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACg > 1:4210565/2‑150 (MQ=21) ttGACGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACg > 2:1266135/2‑150 (MQ=21) gTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACg > 2:3015721/1‑150 (MQ=34) gACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAc > 1:5117807/1‑150 (MQ=34) gACGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAc > 2:6097126/1‑150 (MQ=21) aCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGAGGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAcc > 2:5642457/1‑150 (MQ=21) aCGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAcc > 2:4301772/1‑150 (MQ=21) gggCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAccca > 1:6757447/1‑148 (MQ=21) gCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTCGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAg > 1:1921885/1‑150 (MQ=21) gCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAg > 2:6382325/1‑150 (MQ=34) ctggtggCCCGTCACGCGCTGGGCCCCCGGCTGGGGCCTGCCGCGCGGTCCGCCGGGCAGCACGCCGGGAGTGTGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCGTGGCCAAAGTa < 1:3718154/144‑1 (MQ=11) aTGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTa > 1:690099/1‑150 (MQ=34) tGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCGTGGCCAAAGTaa < 2:3754784/150‑1 (MQ=255) tGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTaa < 2:5033572/150‑1 (MQ=34) gCCCGTCACGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCGCCCGGGAGAAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTTGTTACTTTGGTCGTGGCCAAAGTAAccaaa < 1:4944516/150‑4 (MQ=11) cccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 1:3343963/1‑150 (MQ=34) cccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 1:3574590/1‑150 (MQ=34) ccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgccg > 1:595196/1‑150 (MQ=34) cGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCgg > 1:5413774/1‑150 (MQ=34) tCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGaa > 2:1425889/1‑150 (MQ=34) aaGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAgg > 1:3059625/1‑150 (MQ=34) gggggCCCCAGGATGGGGCCTGCCGCGGGGTCCGCCGGGGTGCACGCCCGGTTTGTGGGGACCCCGGAGCGTAGCGTTGGGGCGGGATGAGGGGCGCCGACGGCTTTGGTTACTTTGGCCACGACCAAATTAACCCGCCGGAAGGGCGGa < 2:1091855/148‑1 (MQ=11) gCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAgg > 1:5678919/1‑150 (MQ=34) cccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAACGGTg > 1:6100375/1‑150 (MQ=21) cccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCAGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGACAggag > 1:3816227/1‑148 (MQ=19) ccatcctGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 1:456467/7‑150 (MQ=21) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 1:2389940/1‑150 (MQ=34) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 2:4811786/1‑150 (MQ=34) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 2:6482941/1‑150 (MQ=34) cAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTCGGGGCCGTATGTGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGaa < 2:5127918/150‑1 (MQ=255) cAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGACAGGTGaa > 2:3277662/1‑150 (MQ=21) atcctGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAAt > 2:332993/5‑150 (MQ=21) aGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAAt > 2:774445/1‑150 (MQ=21) gggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGgcgc > 1:1125451/1‑150 (MQ=34) ggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGcc > 1:3012225/1‑150 (MQ=34) ggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGcc > 1:1310380/1‑150 (MQ=34) tGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGGGAATAGGCGCCTGCa > 1:2899696/1‑150 (MQ=255) gCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCAt > 1:1611717/1‑150 (MQ=37) gcgcGGTCCTCCCGGGAGCACGCCGGGCGTGCGGGGACCCCGGAGCGTCGCGTAGGGGCCGGATGCGGGGAGCCGCCGGCTTTGTTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGt < 2:489770/150‑1 (MQ=11) cgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa > 2:3085691/1‑150 (MQ=37) cgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa > 1:1630092/1‑150 (MQ=37) cgGTCCGCCCGGGAGCATGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGCCGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa < 2:6265625/150‑1 (MQ=255) tcctccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGACAGGTGACTAGGCGCCTGCATCGtgaatga > 2:3774138/1‑150 (MQ=255) ctccCGGGAGCAAGCCGGGTGTGAGGGGACCCCGGAGCGTAGGGTAGGGGCGGGATGTGGGGCGCCGACGGCTTTGTTTACTTTGGCCACGACCAATTTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat < 2:6698285/150‑1 (MQ=11) cccccGGGAGCACGCCGGGCGTGGGGGGACCCGGGCGCGTCGCGTCGGGGCGGGTTGTGGGGAGCCGAGGGCTTTGGTTACTTGGGCCACGACCAATGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat < 2:2499718/148‑1 (MQ=11) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGTGAATAGGCGCCGGCATCGTGaatgaatg > 1:798638/1‑150 (MQ=255) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg > 2:2969263/1‑150 (MQ=37) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg > 2:3611448/1‑150 (MQ=37) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 2:442209/1‑150 (MQ=37) aaGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTATACTTGAt > 1:5192558/1‑150 (MQ=37) aGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtg > 2:3462299/1‑150 (MQ=37) gCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtat > 1:6696226/1‑148 (MQ=37) gttgtgtGGGGACCCGGGTGGGTTGGGTTGGGGGCGGTTGTGGGGCGCCGCGGGTTTTGGTTATTTGGGCCACCAAAAAACAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGaaa < 1:3870443/147‑1 (MQ=2) gtcgtgtGGGGACCCGGGAGCGTTGGGTTGGGGCCGTATGTGGGGAGCGGACGGCTTTTGTTACTTGGGCCACCACCAATGTACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGaaa < 2:2033125/147‑1 (MQ=14) cggggggggCCCCGGGCGCGTTGCGGGGGGGCCGTTTGAGGGGCGCCGCCGGCTTTGTTTACTTTGGCCACGCCCAACGAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAgc < 2:4914306/145‑1 (MQ=14) ggggACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 1:4730507/1‑150 (MQ=39) ggggACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 1:1017023/1‑150 (MQ=39) ggggACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCAACGTGAATGAAAGTCTAATTTATGTGAAAGCGcaca > 1:1775778/1‑150 (MQ=255) ggACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGGGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTTAAAGCGCACAAc > 1:1367829/1‑150 (MQ=255) cccGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCaa > 2:1594924/1‑150 (MQ=39) cccGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTATACTTGATTTGAAAGCGCACAACCCaa > 1:576438/1‑150 (MQ=255) ccGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAAAGAATGTCTACTTTATGTTAAAGCGCACAACCCaaa > 1:5318022/1‑150 (MQ=255) tagcgtagGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaa > 2:3470322/1‑150 (MQ=255) gtttggggCCGTATGTGGGGAGCCGACGTCTTTGTTTATTTTGGCCACGACAAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagc < 2:3518096/146‑1 (MQ=14) ggtgggggCCGTTTGGGGGGAGCCGTGGGTTTTGTTTTTTTGGCCCACCACAAACGAACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagc < 2:2260109/146‑1 (MQ=11) ggCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagctcaaaa > 1:6190318/1‑150 (MQ=255) tttttggggCGCCGTCGGGTTTGGTTAGTTTGGCCTCGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGATAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCttt < 2:4680988/145‑1 (MQ=14) ggggAGCCGCGGGTTTTTTTTACTTGGGCCACGACAAATTAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc < 2:1200546/150‑1 (MQ=14) ggggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc < 2:4168119/150‑1 (MQ=255) ggggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGGGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc > 1:40426/1‑150 (MQ=255) ggggAGCCGACGGCTTTGGTTACTTGGGCCACGACCAACGTACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc < 2:2624099/150‑1 (MQ=255) gAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCGAAAGCGTTAGCGCCgg > 2:3814932/1‑150 (MQ=255) gAGCCGACGACTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCgg < 2:4205998/150‑1 (MQ=255) gACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTg > 2:6591775/1‑150 (MQ=255) cttggtttACTTTGCCCACGACCAAATTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGCCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCgg < 2:2431000/144‑1 (MQ=17) tttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCggg > 1:5053964/1‑150 (MQ=255) ttGTTTACTTGGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 1:6167088/150‑1 (MQ=255) ttGGTTAGTTTGCCCCCCACAAACTTACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 1:185419/150‑1 (MQ=18) ttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 2:4210565/150‑1 (MQ=255) tgggTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 2:690099/148‑1 (MQ=255) ggTTACTTTGGTCGTGGCCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGt > 2:1780121/1‑150 (MQ=255) ggTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGt > 2:4563686/1‑150 (MQ=255) gTTACTTTGGTCGTGGCCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTa > 1:1155530/1‑150 (MQ=255) gTTACTTTGGTCGTGGCCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTa > 1:3963727/1‑150 (MQ=255) gTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAGGTGAAAGCGCACAACCCAAAGGCCCAACAGCTCAAAAGCGTTAGCGCCCGTGCTGATCGGGCgga > 2:6857360/1‑148 (MQ=17) ttACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTAc > 2:5730510/1‑150 (MQ=255) tACTTTGGTCGTGGCCAAAGTAACCCGCCGGAAGGGCGGTAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTTATGTTAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACa > 1:904969/1‑150 (MQ=18) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGACAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTTATGTGAAAGCGCACAACACAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTc > 1:484177/1‑150 (MQ=255) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTATCGCCGGTTCTGATCGGGCGTACAGTc > 2:2935130/1‑150 (MQ=255) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTc > 2:6749811/1‑150 (MQ=255) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTc > 1:2427474/1‑150 (MQ=255) ggCCACGACCAACGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGt < 2:1247547/150‑1 (MQ=255) ggCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGt < 2:510325/150‑1 (MQ=255) ccACGCCCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGttt < 2:5497306/150‑1 (MQ=255) ccACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGCATAGGCGCCGGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACCGTCCGttt > 1:6615653/1‑150 (MQ=255) ccACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGttt > 1:424498/1‑150 (MQ=255) ccACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGCCCGttt > 1:6606953/1‑150 (MQ=255) | GGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTT > NC_002947/2090435‑2090730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |