| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,090,586 | A→G | 5.2% | intergenic (+303/‑292) | PP_1864 → / → PP_1865 | hypothetical protein/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,090,586 | 0 | A | G | 5.2% | 603.6 / 15.9 | 210 | intergenic (+303/‑292) | PP_1864/PP_1865 | hypothetical protein/transposase |
| Reads supporting (aligned to +/- strand): ref base A (142/55); new base G (6/5); total (148/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 | |||||||||||
Only 100 of 214 total aligned reads displayed.
GACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGAT > NC_002947/2090438‑2090735 | gACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAc > 1:5117807/1‑150 (MQ=34)gACGGGCATCCATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAc > 2:6097126/1‑150 (MQ=21) aCGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGAGGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAcc > 2:5642457/1‑150 (MQ=21) aCGGGCATCCATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAcc > 2:4301772/1‑150 (MQ=21) gggCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGAccca > 1:6757447/1‑148 (MQ=21) gggCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCaa > 1:399697/1‑150 (MQ=34) ggCTTGGTTGCCCGGCACGGGGTG‑GGCCCCG‑GGTGGGGGCGTGCGGGGGGGTCCTCCGGGGTGCACGCCGGGTGTGGGGGGACCCCGGAGGGTCGCGTTGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCaaa < 1:2394875/150‑1 (MQ=2) cATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGt > 1:661195/1‑150 (MQ=34) ctggtggCCCGTCACGCGCTG‑GGCCCCC‑GGCTGGGGCCTGCCGCGCGGTCCGCCGGGCAGCACGCCGGGAGTGTGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCGTGGCCAAAGTa < 1:3718154/144‑1 (MQ=11) aTGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTa > 1:690099/1‑150 (MQ=34) tGGTTGCCCGTCTTGCGCTG‑GGCCCCA‑GGTTGGGGCCTGCAGCGCGGTCCTCCGGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTGGGTTACTTTGGTCGTGGCCAAAGTaa < 2:1695485/150‑1 (MQ=11) tGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCGTGGCCAAAGTaa < 2:3754784/150‑1 (MQ=255) tGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTaa < 2:5033572/150‑1 (MQ=34) cccGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 1:3574590/1‑150 (MQ=34) cccGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 1:3343963/1‑150 (MQ=34) cccGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 1:1140674/1‑150 (MQ=34) ccGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgc > 2:4650726/1‑150 (MQ=255) ccGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgccg > 1:595196/1‑150 (MQ=34) ccGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgccg > 2:3066220/1‑150 (MQ=34) cGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCgg > 1:5413774/1‑150 (MQ=34) aaGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAgg > 1:3059625/1‑150 (MQ=34) cgcTG‑GGCCCCC‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCATTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCg < 2:1558010/150‑1 (MQ=21) ggg‑ggCCCCA‑GGATGGGGCCTGCCGCGGGGTCCGCCGGGGTGCACGCCCGGTTTGTGGGGACCCCGGAGCGTAGCGTTGGGGCGGGATGAGGGGCGCCGACGGCTTTGGTTACTTTGGCCACGACCAAATTAACCCGCCGGAAGGGCGGa < 2:1091855/148‑1 (MQ=11) g‑ggCCCCC‑GGCGGGGGCCTGCAGCGGGGACCGCCCGGGAGCACGCCGGGCGTGCGGGGACCCGGGAGCGTAGCGTCGGGGCCGTTTGGGGGGAGCCGCCGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGaaa < 2:2218730/150‑1 (MQ=11) gCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAgg > 2:5300896/1‑150 (MQ=34) cccA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAACGGTg > 1:6100375/1‑150 (MQ=21) cccA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTg > 2:2498123/1‑150 (MQ=34) cccA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCAGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTg > 1:3816238/1‑150 (MQ=21) cccA‑GGATGGGGCCTGCAGCGCGGTCCACCCGGGAGCAAGCCCGGAGGGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGAGGAGGGGAGCCGACGGCTTTGGTAACTTTGGCAACGACCAAAGTAACCCGCCGGAAGGGCTGAAAggag > 2:3200904/1‑148 (MQ=11) ccA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 2:4811786/1‑150 (MQ=34) ccA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 1:6682999/1‑150 (MQ=34) ccatcctGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 1:456467/7‑150 (MQ=21) a‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAAt > 2:774445/1‑150 (MQ=21) aTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGACAGGTGAATAgg > 1:1343813/1‑150 (MQ=21) ggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGcc > 1:56942/1‑150 (MQ=34) ccTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTg > 2:1332290/1‑150 (MQ=35) cTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGCCAGGGGCAGAGGCGCCGGc > 1:4183874/1‑150 (MQ=11) tGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGGGAATAGGCGCCTGCa > 1:2899696/1‑150 (MQ=255) gcgcGGTCCTCCCGGTAGAAAGCCCGTAGTGAGGGGACCCCGGAGCGTAGCTTAGGGGCCGTATGAGGGTAGCCGACGGCTTTGGTTACTTTGGCAACGACAAAATTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGt < 2:3310669/150‑1 (MQ=11) gcgcGGTCCTCCCGGGAGCACGCCGGGCGTGCGGGGACCCCGGAGCGTCGCGTAGGGGCCGGATGCGGGGAGCCGCCGGCTTTGTTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGt < 2:489770/150‑1 (MQ=11) gcgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTCGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtga > 1:2304610/1‑150 (MQ=37) tcctccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGACAGGTGACTAGGCGCCTGCATCGtgaatga > 2:3774138/1‑150 (MQ=255) ctccCGGGAGCAAGCCGGGTGTGAGGGGACCCCGGAGCGTAGGGTAGGGGCGGGATGTGGGGCGCCGACGGCTTTGTTTACTTTGGCCACGACCAATTTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat < 2:6698285/150‑1 (MQ=11) cgccggggAGAACGCCGGGCGGGTGGGGCCCCGGGCGCGTCGCGTTGGGGCGGGTTGTGGGGCGCCGACGGGTTGGGTTACTTGGGCCACGACCAAATAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat < 2:1804562/145‑1 (MQ=2) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGTGAATAGGCGCCGGCATCGTGaatgaatg > 1:798638/1‑150 (MQ=255) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg > 2:3611448/1‑150 (MQ=37) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGGGAATAGGCGCCTGCATCGGGaatgaatg > 1:4816731/1‑150 (MQ=255) cccGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGGGAATAGGCGCCGGCATCGTGCATGAATGt > 1:3795612/1‑150 (MQ=255) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAGCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 2:2383110/1‑150 (MQ=37) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 2:442209/1‑150 (MQ=37) gAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACt > 1:1647676/1‑150 (MQ=37) gCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCACCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTaatag > 1:4905936/1‑146 (MQ=255) aaGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTATACTTGAt > 1:5192558/1‑150 (MQ=37) aGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtg > 2:3462299/1‑150 (MQ=37) gttgtgtGGGGACCCGGGTGGGTTGGGTTGGGGGCGGTTGTGGGGCGCCGCGGGTTTTGGTTATTTGGGCCACCAAAAAACAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGaaa < 1:3870443/147‑1 (MQ=2) gtcgtgtGGGGACCCGGGAGCGTTGGGTTGGGGCCGTATGTGGGGAGCGGACGGCTTTTGTTACTTGGGCCACCACCAATGTACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGaaa < 2:2033125/147‑1 (MQ=14) cggggggggCCCCGGGCGCGTTGCGGGGGGGCCGTTTGAGGGGCGCCGCCGGCTTTGTTTACTTTGGCCACGCCCAACGAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAgc < 2:4914306/145‑1 (MQ=14) ggggACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 1:1017023/1‑150 (MQ=39) ggggACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 1:4730507/1‑150 (MQ=39) cccGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAATGTGAATAGGCGCCTGCATCGTGAATGAATGTATACTTTATGTTAAATAGaacaacaaaa > 1:2493389/1‑146 (MQ=11) ccGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAAAGAATGTCTACTTTATGTTAAAGCGCACAACCCaaa > 1:5318022/1‑150 (MQ=255) cGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAg > 2:6525659/1‑150 (MQ=40) cGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCAAGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATAGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAg > 1:1914318/1‑150 (MQ=255) tagcgtagGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaa > 2:3470322/1‑150 (MQ=255) gtttggggCCGTATGTGGGGAGCCGACGTCTTTGTTTATTTTGGCCACGACAAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagc < 2:3518096/146‑1 (MQ=14) gtagGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGACTAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAAACCAAAGGCCcaaaaaca > 1:1240225/1‑147 (MQ=255) ggCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagctcaaaa > 1:6190318/1‑150 (MQ=255) ttgtggggAGCCGACGGCTTTGTTTACTTTGGCCACGACAAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTa < 2:6618574/146‑1 (MQ=255) ggggAGCCGCGGGTTTTTTTTACTTGGGCCACGACAAATTAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc < 2:1200546/150‑1 (MQ=14) ggggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc < 2:4168119/150‑1 (MQ=255) ggggAGCCGACGGCTTTGGTTACTTGGGCCACGACCAACGTACCCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAgcgc < 2:2624099/150‑1 (MQ=255) gggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGcc > 1:1620412/1‑150 (MQ=255) ggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCGCAAAAGCGATAGCGccc > 2:2938457/1‑149 (MQ=255) gAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCGAAAGCGTTAGCGCCgg > 2:3814932/1‑150 (MQ=255) gAGCCGACGACTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCgg < 2:4205998/150‑1 (MQ=255) ccGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTc > 2:644106/1‑150 (MQ=255) gACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTg > 1:2941228/1‑150 (MQ=255) ggCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATc > 1:1835974/1‑150 (MQ=255) cTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCgg < 1:5642457/150‑1 (MQ=255) tttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCggg > 1:5053964/1‑150 (MQ=255) tttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCggg > 2:3437831/1‑150 (MQ=255) tttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCggg > 2:2909056/1‑150 (MQ=255) ttGTTTACTTGGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 1:6167088/150‑1 (MQ=255) ttGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 2:4210565/150‑1 (MQ=255) tgggTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 2:690099/148‑1 (MQ=255) ggTTACTTTGGTCGTGGCCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGt > 2:6290210/1‑150 (MQ=255) ggTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGt > 2:4563686/1‑150 (MQ=255) gTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAGGTGAAAGCGCACAACCCAAAGGCCCAACAGCTCAAAAGCGTTAGCGCCCGTGCTGATCGGGCgga > 2:6857360/1‑148 (MQ=17) ttACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTAc > 2:5730510/1‑150 (MQ=255) tACTTTGGTCGTGGCCAAAGTAACCCGCCGGAAGGGCGGTAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTTATGTTAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACa > 1:904969/1‑150 (MQ=18) tACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGCAAGGTGACTAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTGTCGCGCCGGTTCTGATCGGGCGTACa > 1:6493518/1‑150 (MQ=255) cttggcccACTACCAAAGAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGt < 1:1425889/144‑1 (MQ=255) tttGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTc > 2:6749811/1‑150 (MQ=255) ggCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGt < 2:510325/150‑1 (MQ=255) ccACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGttt > 1:424498/1‑150 (MQ=255) cACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTg > 2:5516662/1‑150 (MQ=255) cACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTg > 1:1116846/1‑150 (MQ=255) aCGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGc < 2:5118681/150‑1 (MQ=255) aCGACCAAAGGAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGc < 2:6230219/150‑1 (MQ=255) aCCAAATTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGAt < 1:979189/150‑1 (MQ=255) | GACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTCCGTTTGCGAT > NC_002947/2090438‑2090735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |