Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,176,495 G→A 5.1% intergenic (+38/+365) PP_5484 → / ← PP_1924 hypothetical protein/phosphinothricin N‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,176,4950GA 5.1% 1039.3 / 24.8 329intergenic (+38/+365)PP_5484/PP_1924hypothetical protein/phosphinothricin N‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base G (147/163);  new base A (7/10);  total (156/173)
Fisher's exact test for biased strand distribution p-value = 8.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 333 total aligned reads displayed.

GATCTCCCGTGCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACTTGGCTACCATC  >  NC_002947/2176346‑2176644
                                                                                                                                                     |                                                                                                                                                     
      ccGTGCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCgg                                                                                                                                                 <  1:1230342/150‑1 (MQ=255)
        gTGCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGa                                                                                                                                               <  2:4472482/150‑1 (MQ=255)
         tGCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCCAAGAGCgggtc                                                                                                                                              <  1:5152829/150‑3 (MQ=255)
         tGCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCCAAGAGCgggtc                                                                                                                                              <  1:6693536/150‑3 (MQ=255)
          gCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCCAAGAGCgggtcg                                                                                                                                             <  1:4613305/150‑4 (MQ=255)
            gaagaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGAttt                                                                                                                                            >  2:5956626/1‑149 (MQ=255)
            gaagaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTa                                                                                                                                           >  2:11798/1‑150 (MQ=255)
            gaagaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTa                                                                                                                                           >  1:5805896/1‑150 (MQ=255)
            gaagaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTa                                                                                                                                           >  1:856020/1‑150 (MQ=255)
            gaagaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCGTGGAGCGGGATTTa                                                                                                                                           >  1:2267395/1‑150 (MQ=255)
              agaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATc                                                                                                                                         <  2:2988821/150‑1 (MQ=255)
              agaaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATc                                                                                                                                         <  2:1237386/150‑1 (MQ=255)
                aaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCa                                                                                                                                       <  1:1138017/150‑1 (MQ=255)
                aaTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCa                                                                                                                                       >  2:2293073/1‑150 (MQ=255)
                 aTTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAg                                                                                                                                      >  2:3213175/1‑150 (MQ=255)
                  ttACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGt                                                                                                                                     >  2:2876959/1‑150 (MQ=255)
                   tactacTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTg                                                                                                                                    <  2:2578893/150‑1 (MQ=255)
                    actactTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTgg                                                                                                                                   <  2:6462386/150‑1 (MQ=255)
                              tCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCg                                                                                                                         >  2:4568899/1‑150 (MQ=255)
                              tCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCg                                                                                                                         >  1:5302830/1‑150 (MQ=255)
                              tCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCg                                                                                                                         >  2:1382789/1‑150 (MQ=255)
                               cGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCgg                                                                                                                        <  2:1698078/150‑1 (MQ=255)
                                gACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCggg                                                                                                                       >  2:4204711/1‑150 (MQ=255)
                                gACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCggg                                                                                                                       >  1:5202258/1‑150 (MQ=255)
                                gACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCggg                                                                                                                       <  1:3817678/150‑1 (MQ=255)
                                gACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGAAGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCggg                                                                                                                       <  1:1640521/150‑1 (MQ=255)
                                    gCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTaa                                                                                                                   <  1:1500340/150‑1 (MQ=255)
                                     cTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAac                                                                                                                  <  1:657188/150‑1 (MQ=255)
                                     cTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAac                                                                                                                  <  2:1769220/150‑1 (MQ=255)
                                      tttCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAacg                                                                                                                 >  2:2892750/1‑150 (MQ=255)
                                      tttCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAacg                                                                                                                 <  1:5125144/150‑1 (MQ=255)
                                      tttCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAacg                                                                                                                 >  2:6560121/1‑150 (MQ=255)
                                           gCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTGGGGCGGGGTAAAGACGTg                                                                                                            >  1:3084945/1‑150 (MQ=255)
                                           gCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTg                                                                                                            >  1:2371296/1‑150 (MQ=255)
                                            cTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGc                                                                                                           <  2:439942/150‑1 (MQ=255)
                                             tGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGcc                                                                                                          <  1:4384/150‑1 (MQ=255)
                                                   cGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGGTAc                                                                                                    >  1:709088/1‑150 (MQ=255)
                                                    gTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACg                                                                                                   >  2:1832815/1‑150 (MQ=255)
                                                     tGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGt                                                                                                  <  2:3638122/150‑1 (MQ=255)
                                                        tttGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGct                                                                                               <  2:2735708/150‑1 (MQ=255)
                                                         ttGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGctc                                                                                              <  2:6288081/150‑1 (MQ=255)
                                                           ggggTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCtt                                                                                            <  2:1572124/150‑1 (MQ=255)
                                                            gggTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCttt                                                                                           <  1:4242471/150‑1 (MQ=255)
                                                            gggTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTACCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCttt                                                                                           <  1:6350941/150‑1 (MQ=255)
                                                             ggTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGCTTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTa                                                                                          >  1:3624206/1‑150 (MQ=255)
                                                             ggTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTa                                                                                          <  1:750658/150‑1 (MQ=255)
                                                             ggTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTa                                                                                          <  2:4184615/150‑1 (MQ=255)
                                                                tCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGt                                                                                       <  1:3509010/150‑1 (MQ=255)
                                                                  cGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCa                                                                                     <  2:3917494/150‑1 (MQ=255)
                                                                  cGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCa                                                                                     <  2:5246286/150‑1 (MQ=255)
                                                                    ccAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGc                                                                                   <  2:3804930/150‑1 (MQ=255)
                                                                    ccAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGc                                                                                   >  2:726086/1‑150 (MQ=255)
                                                                    ccAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGc                                                                                   <  1:1329964/150‑1 (MQ=255)
                                                                         tCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAacac                                                                              >  2:1524908/1‑150 (MQ=255)
                                                                          cacaATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACAcc                                                                             >  2:4019472/1‑150 (MQ=255)
                                                                           acaATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACAccc                                                                            >  2:6718212/1‑150 (MQ=255)
                                                                            caATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCg                                                                           <  2:2447353/150‑1 (MQ=255)
                                                                             aaTTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCgg                                                                          >  1:6143873/1‑150 (MQ=255)
                                                                              aTTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCggg                                                                                                                       <  2:1532467/104‑1 (MQ=255)
                                                                              aTTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGa                                                                         <  1:2741671/150‑1 (MQ=255)
                                                                               ttCAGCTGCATTGTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGAt                                                                        <  2:3280834/150‑1 (MQ=255)
                                                                                tCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGAtt                                                                       <  2:2060422/150‑1 (MQ=255)
                                                                                 cAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTg                                                                      <  1:6066558/150‑1 (MQ=255)
                                                                                  aGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGa                                                                     <  1:5523786/150‑1 (MQ=255)
                                                                                   gCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAg                                                                    <  1:1864613/150‑1 (MQ=255)
                                                                                     tGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCg                                                                  >  2:3678061/1‑150 (MQ=255)
                                                                                     tGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCg                                                                  >  1:4994856/1‑150 (MQ=255)
                                                                                      gCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGt                                                                 >  2:5134367/1‑150 (MQ=255)
                                                                                      gCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCCGATTGAGCGt                                                                 >  1:4720104/1‑150 (MQ=255)
                                                                                       cATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTc                                                                <  2:4726400/150‑1 (MQ=255)
                                                                                            tCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCAt                                                           <  2:3488215/150‑1 (MQ=255)
                                                                                             cccTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATg                                                          <  2:564498/150‑1 (MQ=255)
                                                                                              ccTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGc                                                         <  1:2096/150‑1 (MQ=255)
                                                                                               cTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCa                                                        >  2:5265975/1‑150 (MQ=255)
                                                                                                tGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCaa                                                       <  2:6815566/150‑1 (MQ=255)
                                                                                                tGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCCCTCTTGGAGCGGGATTTATACACTGGGGGTAGGGCGGGGTAACCACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCCGATTGAGCGTCGCCATGCaa                                                       >  1:1740057/1‑150 (MQ=255)
                                                                                                     gcCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGcc                                                  <  2:6114797/150‑1 (MQ=255)
                                                                                                       cGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGa                                                <  1:5584660/150‑1 (MQ=255)
                                                                                                         gTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACa                                              <  1:5760301/150‑1 (MQ=255)
                                                                                                          tACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATACAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAg                                             >  2:1991121/1‑150 (MQ=255)
                                                                                                              gATTGACGACATGGGTAGGCGAAGTTTCGACCCCCGCGTGGAGCGGGCTTTATCCAGTGGGGGTAGGGCGGGGTAACGACCTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCCGATTTAGCGTAGCCAAGCAAAATCCCACAGctct                                         >  1:5953938/1‑150 (MQ=255)
                                                                                                                ttGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTcc                                       >  1:3942125/1‑150 (MQ=255)
                                                                                                                        aTGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCgaga                               <  2:5021721/150‑1 (MQ=255)
                                                                                                                        aTGGGTAGGCGAAGTTTCGACCCCCTCTTGGAGCGGGAATTAACCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCATTATGTCAGCAAAACCCCGATTGAGCGTCGCCATGCAATAGCCGACAGCTCAAccgccgcta                               >  1:3237716/1‑147 (MQ=255)
                                                                                                                          gggTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACa                             >  1:1592735/1‑150 (MQ=255)
                                                                                                                          gggTAGGCGAAGTTTCGACCCCCACTTGGAGCGGGATTTATCCACTGGGGGTAGGGCGGGGTAACGACCTGCCGGTTACCTGCACTTTATGTCAGCAACACCCCGATTGAGCGTCGCCAAGCAATAGCCGACACCTCTcccccccccaca                             >  1:4672192/1‑144 (MQ=255)
                                                                                                                               ggCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTgg                        <  2:556930/150‑1 (MQ=255)
                                                                                                                                gCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATACAGTGGGGGTAGGGCGGGGTAACGACCTGCCGGTTAAGTGCTCTTTATTTAAGCAACACCCCGATTTATCGTCGCCAAGCAAAATACGACACCTCTCCCGCCGAGACAACAGGc                       >  1:4112090/1‑150 (MQ=255)
                                                                                                                                  gAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTa                     >  2:2817370/1‑150 (MQ=255)
                                                                                                                                  gAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTa                     <  1:2540238/150‑1 (MQ=255)
                                                                                                                                      tttCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATccc                 >  1:1018956/1‑150 (MQ=255)
                                                                                                                                          atcccGCTCCAAGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACt             >  2:6039155/3‑150 (MQ=255)
                                                                                                                                           tcccGCTCCAAGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACtt            >  2:5316859/2‑150 (MQ=255)
                                                                                                                                           aCCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACtt            <  2:4119179/150‑1 (MQ=255)
                                                                                                                                           aCCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACtt            <  2:5805896/150‑1 (MQ=255)
                                                                                                                                           aCCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACtt            <  1:2870579/150‑1 (MQ=255)
                                                                                                                                            cccGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACTTg           >  2:5941418/1‑150 (MQ=255)
                                                                                                                                            cccGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACTTg           >  2:6629450/1‑150 (MQ=255)
                                                                                                                                             ccGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACTTgg          >  1:3426244/1‑150 (MQ=255)
                                                                                                                                                ctctTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACTTGGCTa       >  2:802469/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GATCTCCCGTGCGAAGAATTACTACTTTGCTCGACAGCTTTCGGCTGCACCCGTGATTTGGGGTTCCGCCAGTTCACAATTCAGCTGCATTTTCCCTGAGCGCCGGTACTGATTGACGACATGGGTAGGCGAAGTTTCGACCCGCTCTTGGAGCGGGATTTATCCAGTGGGGGTAGGGCGGGGTAACGACGTGCCGGTTACGTGCTCTTTATGTCAGCAACACCCGGATTGAGCGTCGCCATGCAATAGCCGACAGCTCTCCCGCCGAGACAGCTGGCTATCCCCACTTGGCTACCATC  >  NC_002947/2176346‑2176644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: