| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,246,295 | G→A | 8.0% | intergenic (+50/‑231) | gltX → / → PP_t25 | glutamate‑‑tRNA ligase/tRNA‑Ala |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,246,295 | 0 | G | A | 8.0% | 317.9 / 14.3 | 112 | intergenic (+50/‑231) | gltX/PP_t25 | glutamate‑‑tRNA ligase/tRNA‑Ala |
| Reads supporting (aligned to +/- strand): ref base G (35/68); new base A (5/4); total (40/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.23e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
CCTGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGAA > NC_002947/2246146‑2246442 | ccTGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATg < 1:4874024/150‑1 (MQ=255)ccTGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATg < 1:3400930/150‑1 (MQ=255) tGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑t < 2:3848267/150‑1 (MQ=255) tGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑t < 2:3847548/150‑1 (MQ=255) aCGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑Taa < 2:6145222/150‑1 (MQ=255) gcgcTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGCAAGCAAAGG‑Taaaa > 2:3600852/1‑149 (MQ=255) gcgcTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAAt < 2:3029117/150‑1 (MQ=255) gcgcTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAAt < 2:731728/150‑1 (MQ=255) tACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCaa < 1:6469314/150‑1 (MQ=255) tACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCaa < 1:5803184/150‑1 (MQ=255) tACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCaa < 2:5955106/150‑1 (MQ=255) tACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCaa < 1:2765242/150‑1 (MQ=255) tACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCaa < 2:2452929/150‑1 (MQ=255) aCCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCTTCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAat < 1:850808/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCACAGG‑TAAATTCAatcac > 2:6444477/1‑147 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 2:139375/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 1:4861178/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 1:1413765/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 2:2614867/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 2:139282/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 1:263259/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 1:1752646/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 1:3700936/150‑1 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc > 2:2441222/1‑150 (MQ=255) gCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATc < 1:3270279/150‑1 (MQ=255) ccAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GGGCCCGCGCCTGCCAGGG‑TAAATTCAAAATCGccgtcg > 2:2513804/1‑145 (MQ=255) cAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGc < 1:6712627/150‑1 (MQ=255) aGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGcc < 1:6377571/150‑1 (MQ=255) aGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GGGCCCGCGAAAGCCCAGG‑TAAATTCAATATCGccatagcc > 2:6593543/1‑143 (MQ=255) ggCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCGGCGAATGCGATAT‑TGAATTTACCATTGCATTCGcgg < 1:4824930/150‑3 (MQ=25) ggCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCGGCGAATGCGATAT‑TGAATTTACCATTGCATTCGcgg < 1:1688554/150‑3 (MQ=25) ggCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCGATAT‑TGAATTTACCATTGCATTCGcgg < 2:2221234/150‑3 (MQ=37) ggCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCg < 1:1319898/150‑1 (MQ=255) ggCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GGGCCCCCGGATGCCATGG‑TTAATTGAAAATAGCagtgggcg > 1:5130683/1‑143 (MQ=255) gCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCgg < 2:3332959/150‑1 (MQ=255) ctGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCGGCGAATGCGATAT‑TGAATTTACCATTGCATTCGCGGGCAc < 1:561144/150‑1 (MQ=25) ggACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGc < 1:6213509/150‑1 (MQ=255) aCCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGccc < 1:653090/150‑1 (MQ=255) ccTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCg < 1:1070189/150‑1 (MQ=255) tgctgGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGCGGGGCCCCCCAATG‑AAAGG‑TAAATTAAAAAAAGCATTAGCCCGCccccccccc > 2:1881447/1‑147 (MQ=255) gctgGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTAAATATAGCATTCGCCGGCACGCCCGcgc > 2:4535388/1‑148 (MQ=255) gctgGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGATGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGAGGGAGCGGGC‑GTGCCCGCGAAATCAAAGG‑TAAATTCAATAAAGCATTAGCCGGCACCCCCGCTc > 2:4535384/1‑150 (MQ=255) gggtggggtgTGGAAGAAAGAAAACAACTAGTGGTAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCCGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCca < 2:448250/150‑1 (MQ=255) tggggtgTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCCGTGGGAGCGGGC‑GTGCCCGCGAATGCACTGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAg < 2:6180564/150‑1 (MQ=255) tggggtgTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAg < 2:6180551/150‑1 (MQ=255) tggggtgTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAg < 2:6180594/150‑1 (MQ=255) tggggtgTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCCCGAATGCAAAGG‑TAAATTAAAAAAAGCAAACGCCGGCACCCCCCCTacccccg > 2:3245573/1‑146 (MQ=255) ggtgTCGAAGAAAGAAAACAAAGAGTGCGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATACAATATCGCATTCGCCGGCACGCCCACTCCCACAGGcc < 2:3995904/150‑1 (MQ=255) gaaaACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCCCCAAAGCAAAGG‑TAAAATAAAAATAGCAATAGCCCGCACCCCCCCGACCCCACGCCAAAAAAA‑CCCCaa > 2:2535521/1‑150 (MQ=255) aaCAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GGGCCCCCGCATGCAAAGG‑TAAATTCAAAATAGCAGTCGCCGGCACCCCCCCGCCCCCACGCCCACGAAG‑CCCCacaaa > 2:6555701/1‑150 (MQ=255) aaGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTTATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCTATTGCAATGT‑TAAATTAAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCg < 1:1034717/150‑1 (MQ=255) agagTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCTATTGCAATGT‑TAAATTAAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCgg < 2:3644578/150‑1 (MQ=255) agagTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTAAGCTTTGCACCTAACCTGTGGGAGCGGGC‑GTGCCCGCTAATGCAATGT‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCgg < 2:3644565/150‑1 (MQ=255) tGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCCCGCAAGCAAAGG‑TGAAATGAAAATAGCATTAGCCCGCAAGCCCCCACCCACAGGCCCACAAAGCCCCCAAAAAACCgggta > 2:1944153/1‑148 (MQ=255) ggAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGCGGGGCCCCCCCAGCCAAGGG‑TAAA‑TAAATAAAGCCGTCGCCCGCCCCCCCCCGCCCACACGCCAACGAAC‑CCCCCAAAAAACGCGGGAgg > 2:1278823/1‑150 (MQ=255) cgCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGGGGGTGGGGGC‑GGGCCCGCGAATGCATTGT‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGt < 1:1481599/149‑1 (MQ=255) tGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAg < 2:547862/150‑1 (MQ=255) tttGGCTACCATCGCCTTATTCAGTTTTGCACCTAACCTGTGGGAGGGGGC‑GTGCCCGCTATTGAAATGT‑TAATTACAATAGCGCATTCGCCGCCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGt < 1:2584585/149‑1 (MQ=255) gTTGGCTTCCATCGCCTTATTAAGCTTTGCACCTAACCTGTGGGCGCGGGC‑GTGCCCGCTAATGAATTGT‑TAAATTAAATATCGCATTCGCCGGCCCGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGt < 1:2535521/150‑1 (MQ=255) gTTGGCTTCCATCGCCTGATTCCGCTTGGCACCTAACCCGGGGGCGCGGGG‑GTGCCCGCTAATGCAATGG‑TAAATTCACTACCGCATGCGCCGGCCCGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGt < 1:2584597/150‑1 (MQ=255) ttCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGG‑GGGGCCCCGAAATCAAAGG‑GAAATTGAAAAAAGCAATAGCCGGCCCGCCCGCGCCCACACGCCAACTAAT‑CCCCAAAAAAACCGGGTAGGGCGGTAAGTTTTTGt > 2:2613941/1‑150 (MQ=255) tcccATCGCCTTATTCTGATTTGCACATAACCGGTGGGTGGGGGG‑GTGCCGGC‑TATTCATTGGTTAAATCAAATACCCAATTCGCCGGCCCCCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGt < 1:651418/148‑1 (MQ=255) aTCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGGCCGCGAATGCAAAGG‑TAAAATAAAAATAGCAATAGCCGGCACGCCCCCACCCACAGGCCAACAAAT‑CCCCAAAAAAACGGGGTAGGGGGGTAAGTGATTGttttg > 2:709832/1‑147 (MQ=255) aTCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GGGCCCCCCCAATCAATGG‑GAAAATAAAAAAAGCAATCGCCGGCCCCCCCCCTCCCCCACGCCCAAAAAG‑CCCCCAAAAAAAGGGGTAGGGGGGTTAATTATTGTTAta > 2:3145551/1‑149 (MQ=255) tCGCCTTTTTCCGCTTTCCACCTACCCCGGGGGTGCGGGG‑GGGCCCGCTAATGAATTGG‑TAAATTCACTCCCCCATCCGCCGCCCCGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCt < 1:247251/150‑1 (MQ=255) tCGCCTTATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGACTGCAATGG‑TAAATTCAATAGCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCt < 1:4384286/150‑1 (MQ=255) tCGCCTGATTCAGCTTTGCACCTAACCCGTGGGTGCGGGC‑GTGCCCGCGAATGAATTGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCt < 1:3301298/150‑1 (MQ=255) tCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCCTTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCt < 2:782235/150‑1 (MQ=255) tCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCACATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCt < 1:5941661/150‑1 (MQ=255) tCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑CGGCCCCCGCAAGCCACGG‑TAAATGCAAAATCGCATTCGGCGGCCCCCCCCCGCCCACCGGCCCACAAAG‑CCCCCAAAAACCCGGGGAGGGCGGTGAGGGGATGTTAtag > 2:6588221/1‑148 (MQ=255) gCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑CTGCCCGCGAAAGCAATGG‑TAAATTCAATATAGCATTCGCCGGCACCCCCGCTCCCACAGGCCAACAAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCtgt > 2:1634702/1‑150 (MQ=255) gCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGaa < 2:3500988/150‑1 (MQ=255) aaCCAGTGGGAGCGGGC‑GTGCCCGCGAATGAAATGG‑TAATTTCTATCTCGCATTGGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAtttt < 1:4535384/150‑1 (MQ=255) aCCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAttttt < 2:4623234/150‑1 (MQ=255) aCCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAttttt < 1:5566332/150‑1 (MQ=255) attcgCGGGC‑ACGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCTGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAttttt > 2:3055666/5‑144 (MQ=255) attcgCGGGC‑ACGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCTGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAttttt < 1:3055666/140‑1 (MQ=255) ggAGCGGGC‑GGGCCCGAGATTGAATTGT‑TAAATTAAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAAtt < 1:4099861/150‑1 (MQ=255) gAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTa < 2:5034693/150‑1 (MQ=255) gggC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGttt > 1:5457241/1‑150 (MQ=255) ggC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTg > 2:3082222/1‑150 (MQ=255) ggC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTg > 2:258415/1‑150 (MQ=255) ggC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTg > 1:3935231/1‑150 (MQ=255) gC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGa < 1:6695286/150‑1 (MQ=255) gtgTGCCCGCGAATTCAATGG‑TAAATTAAATATCGCAGTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTGGa < 1:6695331/148‑1 (MQ=255) ccggcgAATGCGATAT‑TGAATTTACCATTGCATTCGCGGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAATTTTTTGAATATTTTTGAAAATTAGTTTGACAGcc > 2:3674733/4‑150 (MQ=25) ccggcgAATGCGATAT‑TGAATTTACCATTGCATTCGCGGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGcc > 1:4383707/4‑150 (MQ=25) cccGCTAATGCAATGG‑TAAATTCAATAGCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAAcc < 1:2667623/150‑1 (MQ=255) cggcgAATGCGATAT‑TGAATTTACCATTGCATTCGCGGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGccc > 1:1682030/3‑150 (MQ=25) cggcgAATGCGATAT‑TGAATTTACCATTGCATTCGCGGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGccc > 2:631676/3‑150 (MQ=25) ccGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGccc > 1:4217744/1‑150 (MQ=255) ccGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGccc > 2:2613332/1‑150 (MQ=255) ccGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGccc > 2:1581194/1‑150 (MQ=255) cgccAATGCAATGG‑TAAATCCAATAGCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCt < 1:3177961/150‑1 (MQ=255) gcgAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTg > 2:6308183/1‑150 (MQ=255) gCAATGG‑TAAATCCACGCCCGCCTCCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATcc < 1:3600852/150‑1 (MQ=255) cAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCg < 1:4421170/150‑1 (MQ=255) aaTGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGa > 2:5642490/1‑150 (MQ=255) aTGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGaa > 2:1899261/1‑150 (MQ=255) aTGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGaa < 2:1864353/150‑1 (MQ=255) | CCTGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGC‑GTGCCCGCGAATGCAATGG‑TAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAG‑CCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGAA > NC_002947/2246146‑2246442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |