| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,059,724 | C→G | 5.9% | intergenic (‑207/+101) | PP_2666 ← / ← PP_2667 | hypothetical protein/ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,059,724 | 0 | C | G | 5.9% | 557.6 / 19.5 | 170 | intergenic (‑207/+101) | PP_2666/PP_2667 | hypothetical protein/ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (39/119); new base G (2/8); total (42/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 | |||||||||||
Only 100 of 176 total aligned reads displayed.
GCGACGATAGACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAGG > NC_002947/3059575‑3059870 | gacgaTAGACGGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCGGGGGGGGCGAAAGGGgcgcgccc > 2:449960/1‑148 (MQ=37) cgaTAGACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCg < 2:3075740/150‑1 (MQ=255) gACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCGTGCTCAAGTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCTGCGCGGccct < 2:4964029/150‑2 (MQ=37) aCAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCa > 2:1566565/1‑150 (MQ=255) aCAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCa > 2:5046428/1‑150 (MQ=255) cAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCTGCGCGGcccttt < 1:2022739/150‑4 (MQ=255) aGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAGGGGCCGCTGCGCGGccctttc < 1:3251276/150‑5 (MQ=37) aTGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GAtctc < 1:1516828/150‑1 (MQ=255) aTGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GAtctc < 2:3010011/150‑1 (MQ=255) tGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCg < 2:1102163/150‑1 (MQ=255) tGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCg < 2:4036777/150‑1 (MQ=255) tGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCg < 1:4756461/150‑1 (MQ=255) tGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCg < 1:1981801/150‑1 (MQ=255) gCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCGTGCGGCGCCCAAAGGCCCCGCCCCCGCCCCAC‑GAtcgccg > 2:2684304/1‑146 (MQ=25) cAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGGCGTGCGTCGCGACAGGGCCGCGCACCGGCCCCCG‑Gagatacgc > 2:5495177/1‑143 (MQ=37) cgaaaGGAGTCGAGGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGcatcat < 2:6609546/148‑1 (MQ=255) cTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCTGCGCGGcccttt < 1:2185607/136‑4 (MQ=255) cTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCTGCGCGGcccttt > 2:2185607/1‑133 (MQ=255) cTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGcatcat < 2:5328336/150‑1 (MQ=255) cTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGcatcat < 2:6818155/150‑1 (MQ=255) cTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGcatcat < 1:4679978/150‑1 (MQ=255) gtagtaGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATa < 1:6836948/150‑1 (MQ=255) gtagtaGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATa < 2:5027651/150‑1 (MQ=255) tagtagATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAg < 2:6675321/130‑1 (MQ=255) agtagATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGa < 1:6433581/150‑1 (MQ=255) agtagATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGa < 1:1260507/150‑1 (MQ=255) gtagATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGAt < 2:4810731/150‑1 (MQ=255) aTGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCt < 1:4242942/150‑1 (MQ=255) tGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTg < 2:1863303/150‑1 (MQ=255) ggCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTgg < 1:62930/150‑1 (MQ=255) gCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGATCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTggg < 2:3291664/150‑1 (MQ=255) gCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTggg > 2:5545894/1‑150 (MQ=255) gCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTggg < 1:1599971/150‑1 (MQ=255) cgcCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCt < 1:4896541/150‑1 (MQ=255) gcCTGAAGGCATGGAGCCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGACAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCtt < 1:4041467/150‑1 (MQ=255) gcCTGAAGGCATGGAGACGCACTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCtt < 1:553079/150‑1 (MQ=255) aaGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCgg < 1:5091813/150‑1 (MQ=255) aGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGc < 2:6765579/150‑1 (MQ=255) ggCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGcc < 1:4577998/150‑1 (MQ=255) ggCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCAAAGCGGcc < 2:4356838/150‑1 (MQ=255) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCGTAGATTGCT‑GGGCCGCAAAGCGGccccag < 1:1093203/150‑4 (MQ=37) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGcccca < 1:1566565/150‑3 (MQ=255) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCAAAGCGGcccca < 2:2462357/150‑3 (MQ=255) aTGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCAAAGCGGcccca < 1:2532460/150‑3 (MQ=255) aCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGa < 1:4822901/150‑1 (MQ=255) aCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGa < 2:5503646/150‑1 (MQ=255) aCGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGa < 1:1097416/150‑1 (MQ=255) cGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGACAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGac < 2:3571145/150‑1 (MQ=255) cTAGGGAGCAACTGTCTTGCTCAATGTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACaa < 1:5603639/150‑1 (MQ=255) gggAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGc < 2:1792755/150‑1 (MQ=255) gAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGc > 1:6326706/1‑127 (MQ=255) gAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCg < 2:2781268/150‑1 (MQ=255) aGCAACTGTCTTGCTCAATTTCTGAAAGCGGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGc < 1:2855845/150‑1 (MQ=255) aCTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTccc < 2:5654971/150‑1 (MQ=255) cTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCGTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCca < 1:1425270/150‑1 (MQ=255) tCAATTTCTGAACGCTGGCGCGATCCCTGTGGGAGCGGCCTGGCGTCGCGAACGGGCCGCGCAGCGGCCCCTG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTa < 1:6026904/150‑1 (MQ=255) tCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGcatcat > 2:5613936/1‑87 (MQ=255) tCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGcatcat < 1:5613936/87‑1 (MQ=255) cTGAACGCGGGCGCGATCCGTGTGGGCGCGGCCTTGCGTCGCGACCGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATCGATTGCTGGGGCCGCTTTGCGGCCCACTCGCGAAACAAGGCCGCTCCCACACGGGTTACACGCCa < 1:5158380/150‑1 (MQ=38) tGAAAGCTGGCGCGTGCCCTGGGGGAGCGGCCTTGCGTGGCGAACGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAg < 1:5793213/150‑1 (MQ=37) tGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGACCGGGCCGCGCCGCGGCCCCAG‑GATCTCGGCATCATGCATAGTTTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAg < 1:899566/150‑1 (MQ=255) aaGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGtt < 1:1677850/150‑1 (MQ=255) cTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTgc < 2:4161615/150‑1 (MQ=255) tgGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCa < 2:1886114/150‑1 (MQ=255) gCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCt < 1:1973467/150‑1 (MQ=255) ggCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGc < 1:492613/150‑1 (MQ=255) ccTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCAt > 2:237138/1‑150 (MQ=255) ccTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCAt < 2:3789414/150‑1 (MQ=255) gCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTg < 2:1945393/150‑1 (MQ=255) cGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTgg < 2:3854146/150‑1 (MQ=255) gTCGCGAATGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATTGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTAAGCGCGGCTTGCGCAGCGCTGCATGCTggg < 1:2397494/150‑1 (MQ=255) gTCGCGAAAGGGCCGCGCAGCGGCCCCCG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTggg < 1:2668160/150‑1 (MQ=255) gTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTggg < 2:3959357/150‑1 (MQ=255) gTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTggg < 1:1452478/150‑1 (MQ=255) gcgAACGGGCCGCGCAGCGGCCCCCG‑GATCTCGGCATCATGCAGAGCTGGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGt < 1:3736981/150‑1 (MQ=38) gcgAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGt > 1:6844182/1‑150 (MQ=255) cgAATGGGCCGCGCCGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGtt < 1:4588083/150‑1 (MQ=255) gAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTg > 2:6383598/1‑150 (MQ=255) gAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTg > 2:3524802/1‑150 (MQ=255) attgggCCGCAAAGCGGCCCCAGCAATCTATGCATGATGCCGAGA‑TCCTGGGGCCGCTGCGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGa > 2:762877/4‑150 (MQ=14) aaaGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGa < 2:5910818/150‑1 (MQ=255) aaaGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGa > 1:3999982/1‑150 (MQ=255) aaaGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGGTGa > 2:5147687/1‑150 (MQ=255) aaGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGaa > 2:891454/1‑150 (MQ=255) cgggCCGCGCAGCGGCCCCAG‑GATCGCGGCATCTTGCATAGCTTGCTGGGGCCGCTTTGCGGCCCAATCGCGACCCAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAg < 1:449960/149‑1 (MQ=255) aGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAg < 1:6680455/150‑1 (MQ=255) ggCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGt < 2:3902055/150‑1 (MQ=255) gCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGCTGGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg < 2:6297846/150‑1 (MQ=255) gCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg > 2:4719347/1‑150 (MQ=255) gCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg > 2:6233279/1‑150 (MQ=255) gCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTg > 1:1315495/1‑150 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa > 2:5549999/1‑150 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 2:5620041/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 2:445438/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:554292/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 2:205833/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAAGCGCGACACACGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGa < 1:1848652/150‑1 (MQ=255) ccGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCT‑GGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAg > 2:5107896/1‑150 (MQ=255) gcgcAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAgg < 1:5033940/150‑1 (MQ=255) gcgcAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAgg > 2:2638591/1‑150 (MQ=255) | GCGACGATAGACAGTAAATGCAGTACTAAAGTAGTAGATGGCCGGGCGCCTGAAGGCATGGAGACGCCCTAGGGAGCAACTGTCTTGCTCAATTTCTGAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCGCAGCGGCCCCAG‑GATCTCGGCATCATGCATAGATTGCTGGGGCCGCTTTGCGGCCCAATCGCGACACAAGGCCGCTCCCACACGGGTTACACGCCAGGTTTTCAGCGCGGCTTGCGCAGCGCTGCATGCTGGGGGTTGAAGGTGAGG > NC_002947/3059575‑3059870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |