BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,560,509	C→T	G99D (GGC→GAC)	PP_1366 ←	transcriptional regulator MvaT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,560,509	0	C	T	100.0%	1327.3 / NA	354	G99D (GGC→GAC)	PP_1366	transcriptional regulator MvaT
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (206/148); total (206/148)

Only 100 of 361 total aligned reads displayed.

AACAAAAACGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAGGGCAATCACGTCGCGCAG  >  NC_002947/1560363‑1560654

aaCACACACGCCGGCAATGTGCCGGCGTATTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCt                                                                                                                                                 <  1:4040541/149‑1 (MQ=255)

    aaaaCGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCCGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTgg                                                                                                                                             >  1:8015130/1‑149 (MQ=255)

    aaaaCGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTgg                                                                                                                                             >  2:4418358/1‑149 (MQ=255)

      aaCGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGtt                                                                                                                                           >  1:1619046/1‑149 (MQ=255)

       aCGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTTCCGTCTGTGGttt                                                                                                                                          >  1:4367051/1‑149 (MQ=255)

        cGCCGGCACATTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTc                                                                                                                                         >  1:3080220/1‑149 (MQ=255)

        cGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTc                                                                                                                                         >  1:5980287/1‑149 (MQ=255)

        cGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTc                                                                                                                                         <  2:4532788/149‑1 (MQ=255)

         gCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCg                                                                                                                                        <  2:6016630/149‑1 (MQ=255)

          ccGGCAATGTGCCGGCGTTTTTTTTGTTCGAAGCAAGAGGGCGTATGCGGATAATAAGTCCAGCAGGGTTGCCCAGCATTCAAACACCTCGCCGCCCCAAGTGGCTTTACACAATTTACGGGTCTTGTGGTTGCCGTCTTTGGTTTAGa                                                                                                                                       >  1:2653613/1‑149 (MQ=255)

           cGGCAATCTGCCGGCGTATTAGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTCCGAt                                                                                                                                      <  2:5087918/149‑1 (MQ=255)

             gCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCa                                                                                                                                    <  2:3078177/149‑1 (MQ=255)

              cAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCAc                                                                                                                                   >  2:3103916/1‑149 (MQ=255)

                aTGAGCCGGCGTACTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCACCCACGTCGCCGCCCCCAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACtt                                                                                                                                 <  2:6135011/149‑1 (MQ=255)

                 tgtgCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGTAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTc                                                                                                                                <  2:6105815/149‑1 (MQ=255)

                     ccGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCg                                                                                                                            >  2:7068455/1‑149 (MQ=255)

                        gCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATAACATCACCGTtg                                                                                                                         >  1:2761243/1‑149 (MQ=255)

                           tttttGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGc                                                                                                                      >  2:3557531/1‑149 (MQ=255)

                           tttttGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGc                                                                                                                      >  1:3463674/1‑149 (MQ=255)

                             tttGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCgg                                                                                                                    >  2:4161492/1‑149 (MQ=255)

                                 ttgtGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTc                                                                                                                >  1:1834177/1‑149 (MQ=255)

                                  tgtgCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCt                                                                                                               <  2:4623642/149‑1 (MQ=255)

                                     gCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGt                                                                                                            <  1:4579569/149‑1 (MQ=255)

                                     gCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGt                                                                                                            >  2:6356539/1‑149 (MQ=255)

                                     gCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGt                                                                                                            >  1:917248/1‑149 (MQ=255)

                                     gCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGt                                                                                                            <  1:1002006/149‑1 (MQ=255)

                                      cGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTa                                                                                                           <  2:2176144/149‑1 (MQ=255)

                                       gAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTAt                                                                                                          >  2:4216982/1‑149 (MQ=255)

                                       gAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTAt                                                                                                          >  2:5268965/1‑149 (MQ=255)

                                       gAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTAt                                                                                                          <  1:1762593/149‑1 (MQ=255)

                                       gAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTAt                                                                                                          >  2:6700596/1‑149 (MQ=255)

                                       gAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTAt                                                                                                          >  1:7253592/1‑149 (MQ=255)

                                           cAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCGAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTGTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTgat                                                                                                      >  2:6236745/1‑147 (MQ=255)

                                              gagGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGGTCACTTc                                                                                                                                >  1:6937306/1‑120 (MQ=255)

                                               agGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGAc                                                                                                  <  1:3125102/149‑1 (MQ=255)

                                                 ggCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCt                                                                                                <  1:111664/149‑1 (MQ=255)

                                                 ggCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCt                                                                                                >  1:719744/1‑149 (MQ=255)

                                                  gCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCtt                                                                                               >  1:1480496/1‑149 (MQ=255)

                                                       tGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTtgcgtg                                                                                          >  1:5431091/1‑149 (MQ=255)

                                                             tAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCt                                                                                    <  2:7975181/149‑1 (MQ=255)

                                                                tCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTgg                                                                                 <  1:1686143/149‑1 (MQ=255)

                                                                 cAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGt                                                                                >  1:2231648/1‑149 (MQ=255)

                                                                  aGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTg                                                                               <  1:7737907/149‑1 (MQ=255)

                                                                   gTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGa                                                                              >  1:3990045/1‑149 (MQ=255)

                                                                     ccAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACg                                                                            <  1:4645931/149‑1 (MQ=255)

                                                                       agcagGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGt                                                                          >  1:7349531/1‑149 (MQ=255)

                                                                       agcagGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGt                                                                          >  2:2747862/1‑149 (MQ=255)

                                                                        gcagGGTTGCCCAGCTTTCAACCACGTCGCCGACCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACATCACCGTTGTGCGGGTTCATGTATTGATTGACCTTGAGTGCGAGCTTGGTGACGGTa                                                                         >  2:5718719/1‑149 (MQ=255)

                                                                          agGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGt                                                                       <  1:3786578/149‑1 (MQ=255)

                                                                           gggTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTc                                                                      >  1:7576304/1‑149 (MQ=255)

                                                                               tGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCCGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGa                                                                  <  1:2988993/149‑1 (MQ=255)

                                                                               tGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGa                                                                  <  2:3365026/149‑1 (MQ=255)

                                                                               tGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGa                                                                  <  2:4092903/149‑1 (MQ=255)

                                                                               tGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGa                                                                  >  1:6271980/1‑149 (MQ=255)

                                                                                 cccAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGAcc                                                                >  2:4884125/1‑149 (MQ=255)

                                                                                  ccAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCg                                                               >  2:1843679/1‑149 (MQ=255)

                                                                                  ccAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCGTGCGTGCGCGCTTGGTGACGGTAGTCTGGACCg                                                               >  2:5825143/1‑149 (MQ=255)

                                                                                   cAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGa                                                              <  1:5591633/149‑1 (MQ=255)

                                                                                   cAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGa                                                              >  2:7228724/1‑149 (MQ=255)

                                                                                    aGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGaa                                                             <  1:4965302/149‑1 (MQ=255)

                                                                                     gCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAAc                                                            >  1:5181807/1‑149 (MQ=255)

                                                                                          cAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGa                                                       <  2:1602316/149‑1 (MQ=255)

                                                                                             ccACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGt                                                    >  2:5634040/1‑149 (MQ=255)

                                                                                              cACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTg                                                   >  1:19467/1‑149 (MQ=255)

                                                                                                 gTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCt                                                <  2:7664835/149‑1 (MQ=255)

                                                                                                  tCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCtt                                               <  2:6586869/149‑1 (MQ=255)

                                                                                                  tCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCtt                                               <  2:2522075/149‑1 (MQ=255)

                                                                                                  tCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCtt                                               <  2:4714396/149‑1 (MQ=255)

                                                                                                     ccgccCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCt                                            >  1:6843009/1‑149 (MQ=255)

                                                                                                      cgccCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTc                                           <  2:1705541/149‑1 (MQ=255)

                                                                                                      cgccCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTc                                           >  1:6500014/1‑149 (MQ=255)

                                                                                                        ccccAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAg                                         <  2:2730045/149‑1 (MQ=255)

                                                                                                        ccccAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAg                                         >  2:7728852/1‑149 (MQ=255)

                                                                                                         cccAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGt                                        >  1:6430032/1‑149 (MQ=255)

                                                                                                          ccAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGtt                                       >  2:6968491/1‑149 (MQ=255)

                                                                                                          ccAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGtt                                       <  1:2071309/149‑1 (MQ=255)

                                                                                                           cAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGttt                                      <  2:3006015/149‑1 (MQ=255)

                                                                                                           cAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCAATCACTTCACCGTTGTGCGGGTTCTGGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGttt                                      >  2:880815/1‑149 (MQ=255)

                                                                                                             aGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCg                                    <  1:3309842/149‑1 (MQ=255)

                                                                                                             aGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCg                                    <  1:5706082/149‑1 (MQ=255)

                                                                                                             aGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCg                                    <  1:4216982/149‑1 (MQ=255)

                                                                                                             aGTGGCTTTCCACTCTTTAAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGAACACTTCACCGTTGTGCTTGTTCTATTATTGCTTGACCATGCGTTCGCGCTTGGTGACGGTAGTCTTGACCGAACCAAGAGGTGCCTTGCTCAGTTTCg                                    >  2:6420969/1‑149 (MQ=255)

                                                                                                              gTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGa                                   >  1:5014798/1‑149 (MQ=255)

                                                                                                                ggCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGAct                                 <  1:5861070/149‑1 (MQ=255)

                                                                                                                 gCTTTCCACTCTTTCAGGGTCTTGTGGTGGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGActc                                <  1:4504311/149‑1 (MQ=255)

                                                                                                                  cTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGActct                               >  2:1149999/1‑149 (MQ=255)

                                                                                                                     tCCACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGa                            >  2:1015010/1‑149 (MQ=255)

                                                                                                                      ccACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGAt                           <  1:7805258/149‑1 (MQ=255)

                                                                                                                       cACTCTTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTACGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGCAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATc                          >  1:6696767/1‑149 (MQ=255)

                                                                                                                         ctctTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGa                        >  1:5257576/1‑149 (MQ=255)

                                                                                                                         ctctTTCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGa                        >  1:1263735/1‑149 (MQ=255)

                                                                                                                             ttCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAg                    >  2:3436505/1‑149 (MQ=255)

                                                                                                                             ttCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAg                    <  1:3366136/149‑1 (MQ=255)

                                                                                                                             ttCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGATGTGCGGGATCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAg                    >  2:744726/1‑149 (MQ=255)

                                                                                                                              tCAGGGTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAgg                   <  1:2545332/149‑1 (MQ=255)

                                                                                                                                aGGCTCTTCTGGTTGCCGTCTTAGGTTACGATCACATAACAGATGTGCGGCTACTTGTATTGAAAGACCTTTCGTGCGCTCTTGCTGACGGAAGTCTTGACCGAACCACGAGTAGCCATCCTCAGTTTCGACACTGGATCGAGCAGGGc                 >  2:1055534/1‑149 (MQ=255)

                                                                                                                                  ggTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAGGGCaa               >  2:5328348/1‑149 (MQ=255)

                                                                                                                                   gTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAGGGCAAt              >  2:3751932/1‑149 (MQ=255)

                                                                                                                                   gTCTTGTGGTTGCCGTCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCGTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGAACGAACCACGAGGTGCCTTGCTCAGATTCGACTCTGGATCGAGCAGGGCAAt              >  2:1382845/1‑149 (MQ=255)

                                                                                                                                              gccgtcTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAGGGCAATCACGTCGCGCa   <  2:2134814/149‑1 (MQ=255)

AACAAAAACGCCGGCAATGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGATCACTTCACCGTTGTGCGGGTTCTTGTATTGCTTGACCTTGCGTGCGCGCTTGGTGACGGTAGTCTTGACCGAACCACGAGGTGCCTTGCTCAGTTTCGACTCTGGATCGAGCAGGGCAATCACGTCGCGCAG  >  NC_002947/1560363‑1560654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`