New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1154881	241 (0.760)	13 (0.040) +C	8/270	NT	5.9%	intergenic (‑173/+84)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	2076160 =	175 (0.550)					intergenic (+120/+107)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor

CCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1154752‑1154881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAA  >  NC_002947/2076160‑2076241                                                                                                                                   |                                                                                   CCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACA                                                                 <  2:3423938/150‑1      CGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTG                                                            <  2:6083674/150‑1                                     GGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCG                             <  1:352194/150‑1                                     GGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCG                             <  2:1882834/150‑1                                      GTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG                            <  1:4948269/150‑1                                      GTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG                            <  2:3944081/150‑1                                      GTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG                            <  2:3357399/150‑1                                      GTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG                            <  1:1328444/150‑1                                       TAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG                           <  1:2123343/150‑1                                               GTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCG                   <  1:380307/150‑1                                                                TTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCCCAGGgatcgcg  <  1:3528610/150‑8                                                                     TTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCG                               >  1:710381/1‑116                                                                     TTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCG                               <  2:710381/116‑1                                                                                                                                   |                                                                                   CCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1154752‑1154881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAA  >  NC_002947/2076160‑2076241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.