| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1441052 = | 283 (0.890) | 21 (0.070) +A |
10/270 | NT | 7.7% | intergenic (‑133/+20) | PP_1256/PP_1257 | alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase |
| ? | NC_002947 | 2962069 = | 225 (0.710) | intergenic (+32/‑164) | PP_2588/PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein | |||||
CAACGAGACCGACGTCCTGACCGACGCTCAGCGCAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1441180‑1441052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTG > NC_002947/2962069‑2962158 | CAACGAGACCGACGTCCTGACCGACGCTCAGCGCAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCACGCCCGCtcc < 1:1960244/150‑4CAACGAGACCGACGTCCTGACCGACGCTCAGCGCAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCACGCCCGCtcc < 1:4871971/150‑4 GACCGACGTCCTGACCGACGCTCAGCGCAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGTTCACCCGCGAACACCGG < 1:4077489/150‑1 GTCCTGACCGACGCTCAGCGCAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCCCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCC < 1:2969756/150‑1 CAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAA‑TCCGGCGAAGCCGGTGCCATGCACCGGGTCGCC < 1:5843938/150‑1 TATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGA > 1:1014409/1‑150 GCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCCCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTC < 2:2860649/150‑1 GAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCG < 1:1763133/150‑1 AACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGG < 1:6806964/150‑1 CAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCAcg < 2:5794537/150‑3 CAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCAcg < 2:4006629/150‑3 AGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGC < 2:3320842/150‑1 GCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCC > 2:264635/1‑150 CTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCCCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCC < 1:4910344/150‑1 TTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACCTCGCCTGAGCAGCCACTGCTCTCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACA < 1:2653765/150‑1 TTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACA < 1:264635/150‑1 CCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGg < 2:4688319/150‑2 CAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGT‑GGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGggaga < 2:3287619/150‑6 AGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGggaga < 2:1014409/150‑6 CTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGc < 2:5042873/150‑2 TGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGca < 1:5918016/150‑3 | CAACGAGACCGACGTCCTGACCGACGCTCAGCGCAACTATGCCGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1441180‑1441052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTG > NC_002947/2962069‑2962158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |