| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2261161 = | 228 (0.720) | 19 (0.060) | 4/270 | NT | 8.1% | intergenic (+229/‑475) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
| ? | NC_002947 | 2261257 = | 206 (0.650) | intergenic (+325/‑379) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase | |||||
CTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2261262‑2261161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGA > NC_002947/2261257‑2261405 CTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCTGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCg > 1:6179349/1‑149CTCGCTACGGTCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGTAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCC > 1:6543140/1‑150CTCGCTACGGTCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGTAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCC > 2:1648338/1‑150 TCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGA > 2:7389640/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCCTCCATGCCCGTCACCTCCC‑TCCGCACGCCCTGCGTGAGGGGACCCCGGAGCGTCGCGTAGGGGCCGGATGAGGGGAGCCGACGGT > 2:3361699/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCCTCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGT > 2:7433798/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCAGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCCagcgtt > 1:536170/1‑144 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGT > 2:4895908/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGc > 1:6336787/1‑149 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGc > 2:1279550/1‑149 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGT > 1:3141712/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGc > 1:1025330/1‑149 CGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTT > 2:3267233/1‑150 CGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTT > 2:7326634/1‑150 TCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCCAGCGTTTTTTGGTTac > 1:1085747/1‑148 TCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCCAGCGTTTTTTGGTTac > 1:1085821/1‑148 CAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGG < 1:7433798/150‑1 C‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGG > 1:3002906/1‑150 TTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTG < 1:7389640/150‑1 GAGCGTGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGA < 2:2366331/150‑1 GAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGGTCCTTTTTGCCACGACAAAACGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCAACTCGGTGTGA > 2:3400098/1‑150 CTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2261262‑2261161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACGGTTTTTGGTTCCTTTTTGCCACGACAAAAAGGGACCCGCCGTAAGGGCGGAAAGGTGACTATGCGCCACCTGCGTGAATGAATACCTACTCGGTGTGA > NC_002947/2261257‑2261405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |